BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0995.p
         (104 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096500|ref|YP_001101575.1| hypothetical protein HEAR3351 [...   110   2e-26
gi|134094476|ref|YP_001099551.1| hypothetical protein HEAR1249 [...    56   4e-10

>gi|134096500|ref|YP_001101575.1| hypothetical protein HEAR3351
           [Herminiimonas arsenicoxydans]
          Length = 162

 Score =  110 bits (274), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 70/99 (70%)

Query: 1   MQTTKFKTVRSDVQSLLQQAQDMFAEAATATGAKADELRAGAQALLEQALNTAQDAQAAV 60
           M+ +  KT RSD+++L++ AQ++F EA +ATG +ADELR     LL+ AL  AQ+ Q A 
Sbjct: 63  MKASTLKTTRSDMKTLVKDAQELFREATSATGERADELRHRGLQLLDSALTKAQEVQTAA 122

Query: 61  VDTSRQIVTSTDDYVHSNPWRAVVIGTGIGLLVGLAVGR 99
           ++T ++I   TDDYVH NPWRAV I  G+G+LVGL + R
Sbjct: 123 LETGKEIAEKTDDYVHENPWRAVAISAGVGVLVGLLISR 161


>gi|134094476|ref|YP_001099551.1| hypothetical protein HEAR1249
          [Herminiimonas arsenicoxydans]
          Length = 100

 Score = 55.8 bits (133), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%)

Query: 1  MQTTKFKTVRSDVQSLLQQAQDMFAEAATATGAKADELRAGAQALLEQALNTAQDAQAAV 60
          M   + + V  D+++L Q A+ M  EA  +   K  EL A        A+  A++  A  
Sbjct: 1  MAEARIEAVSDDLKALSQDAKKMAREAQESLLQKNGELSAKCVEFFNSAVAAAKEVPAVA 60

Query: 61 VDTSRQIVTSTDDYVHSNPWRAVVIG 86
          V  ++++  STD+YVH NPWRAV + 
Sbjct: 61 VAKTKEVAVSTDEYVHHNPWRAVTLS 86


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.125    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 99,818
Number of extensions: 2230
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 1,000,347
Length adjustment: 69
Effective length of query: 35
Effective length of database: 772,992
Effective search space: 27054720
Effective search space used: 27054720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 122 (51.6 bits)