BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0991.p (241 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 399 e-113 gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 235 2e-63 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 216 8e-58 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 125 3e-30 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 115 2e-27 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 399 bits (1025), Expect = e-113, Method: Compositional matrix adjust. Identities = 194/240 (80%), Positives = 215/240 (89%) Query: 1 MTTNILKVEQLSVAYGGIQAVKGIALEVNEGELVTLIGANGAGKTTTLKAITGTLPSSKV 60 MTT +LK+ L VAYGGIQAVKGI L+V +GEL+TLIGANGAGKTTTLKAITGTLP +V Sbjct: 1 MTTTVLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRV 60 Query: 61 DGHIYYLGHPLKGKKSFELVKDKLAMVPEGRGVFTRMSIHENLLMGAYTSNDKGQIAADI 120 DGHI Y G +KG SFELV+ KLAMVPEGRGVFTRMSI ENLLMGA+T NDK IA D+ Sbjct: 61 DGHIEYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRNDKQGIADDM 120 Query: 121 DRWFEVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIF 180 ++WF VFPRLKERAAQMAGTLSGGEQQMLAMARALMSHP+LLLLDEPSMGLSPIMVEKIF Sbjct: 121 EKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIMVEKIF 180 Query: 181 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMNGQAKQMLDDPRVKAAYLGE 240 EVIR+V+AQGITILLVEQNA+LAL+AAHR YVMESGLITM G A+QML+DP+V+ AYLGE Sbjct: 181 EVIRSVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLNDPKVREAYLGE 240 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 235 bits (599), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 121/244 (49%), Positives = 172/244 (70%), Gaps = 7/244 (2%) Query: 1 MTTNILKVEQLSVAYGGIQAVKGIALEVNEGELVTLIGANGAGKTTTLKAITGTL-PSSK 59 M+ +LKVE L V YG I+A +GI++EV EGE V +IG+NGAGK++ LKAI G + P+S Sbjct: 1 MSAPLLKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPAS- 59 Query: 60 VDGHIYYLGHPLKGKKSFELVKDKLAMVPEGRGVFTRMSIHENLLMGAYTSNDKGQIAA- 118 G I G P++G S E+V +A+VPEGR VF S+ +NL++G + + +AA Sbjct: 60 --GSITLGGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAAL 117 Query: 119 --DIDRWFEVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMV 176 DIDR F++FPRLKER Q AG+LSGGEQQML +AR LMSHP+LLL+DE S+GL+P ++ Sbjct: 118 RDDIDRMFQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKIL 177 Query: 177 EKIFEVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMNGQAKQMLDDPRVKAA 236 + +F V+ +++ QG++ILLVEQ A AL R YVME+G + ++G++ ++ D V A Sbjct: 178 DFLFPVLVDLNRQGLSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDLVKDAAVMEA 237 Query: 237 YLGE 240 YLG+ Sbjct: 238 YLGK 241 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 216 bits (550), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 102/234 (43%), Positives = 159/234 (67%), Gaps = 2/234 (0%) Query: 6 LKVEQLSVAYGGIQAVKGIALEVNEGELVTLIGANGAGKTTTLKAITGTLPSSKVDGHIY 65 L V+ L+ Y + + +++EV G++ ++GANGAGK+T +++I G P + G I Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQ--GEIL 61 Query: 66 YLGHPLKGKKSFELVKDKLAMVPEGRGVFTRMSIHENLLMGAYTSNDKGQIAADIDRWFE 125 + G L G+K+ ++ ++ +PEGR VF RMS+ ENL +GA+ + + + R +E Sbjct: 62 WNGRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVTNSAVVRERLARVYE 121 Query: 126 VFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIRN 185 +FPRLKERAAQ+AGT+SGGEQ M+++ R LM+ P+LL++DEPS+GLSP+ V++ F VIR Sbjct: 122 IFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVIRR 181 Query: 186 VSAQGITILLVEQNAKLALEAAHRGYVMESGLITMNGQAKQMLDDPRVKAAYLG 239 ++A GIT+LLVEQNA+ L +H GYV+ G + G A+++ + V+AAY G Sbjct: 182 INALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASNDDVRAAYFG 235 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 125 bits (313), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 130/241 (53%), Gaps = 9/241 (3%) Query: 6 LKVEQLSVAYGGIQAVKGIALEVNEGELVTLIGANGAGKTTTLKAITGTLPSSKVDGHIY 65 L V L +YG Q V+ +AL+V GE++ L+G NGAGKTT+ I G +PS G I Sbjct: 5 LIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDA--GRIE 62 Query: 66 YLGHPLKGKKSFELVKDKLAMVPEGRGVFTRMSIHENL--LMGAYTSNDKG----QIAAD 119 G + + + + L+ +P+ VF ++S+ +N+ ++ N K QI Sbjct: 63 LDGVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQR 122 Query: 120 IDRWFEVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKI 179 +D K R Q A +LSGGE++ + +ARAL ++P+ +LLDEP G+ PI V +I Sbjct: 123 LDTLLADLQIEKLRENQ-ALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEI 181 Query: 180 FEVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMNGQAKQMLDDPRVKAAYLG 239 ++R + +GI +L+ + N + L R Y++ G + +G+ ++ D V+ YLG Sbjct: 182 QRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVYLG 241 Query: 240 E 240 E Sbjct: 242 E 242 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 115 bits (288), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 138/256 (53%), Gaps = 21/256 (8%) Query: 3 TNILKVEQLSVAYGGIQAVKGIALEVNEGELVTLIGANGAGKTTTLKAITGTL-PSSKVD 61 T L+ + +++A+GG+ A ++ + G + ++IG NGAGK+T + ++G P+S Sbjct: 345 TTCLQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTS--- 401 Query: 62 GHIYYLGHPLKGKKSFELVKDKLAMVPEGRGVFTRMSIHENLLMGA---YTS-------- 110 G I ++G K+S +L + LA + +F M+ EN+L+GA Y S Sbjct: 402 GSIEFMGQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLR 461 Query: 111 -----NDKGQIAADIDRWFEVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLD 165 +D+ + AA+ E + L + A + A L G Q+ L +ARAL PKLLLLD Sbjct: 462 LPSYFHDERRYAAEARCLLE-YVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLD 520 Query: 166 EPSMGLSPIMVEKIFEVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMNGQAK 225 EP+ GL+ +E + ++IRN+++ IT+LLVE + + + + V++ G + +G Sbjct: 521 EPAAGLTHGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVA 580 Query: 226 QMLDDPRVKAAYLGEG 241 ++ +P V AY G G Sbjct: 581 EVRSNPAVIEAYFGTG 596 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 431,491 Number of extensions: 16971 Number of successful extensions: 224 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 185 Number of HSP's successfully gapped: 44 Length of query: 241 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 162 Effective length of database: 740,042 Effective search space: 119886804 Effective search space used: 119886804 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)