BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0988.p (309 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095639|ref|YP_001100714.1| high-affinity branched-chain am... 518 e-148 gi|134096410|ref|YP_001101485.1| high-affinity branched-chain am... 180 7e-47 gi|134095849|ref|YP_001100924.1| high-affinity branched-chain am... 145 2e-36 gi|134093665|ref|YP_001098740.1| branched chain amino acid ABC t... 106 2e-24 >gi|134095639|ref|YP_001100714.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 309 Score = 518 bits (1334), Expect = e-148, Method: Compositional matrix adjust. Identities = 267/309 (86%), Positives = 295/309 (95%) Query: 1 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQV 60 MDIFIQQIINGLVLGSMYAL+ALGYTMVYGVLNLINFAHGD+LM+GAM GL++LK++ V Sbjct: 1 MDIFIQQIINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAMAGLTILKMLNTV 60 Query: 61 APHLPGIVQLVIAIVGAIPVCIVVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTFAM 120 AP LPGIV+L+IAI+GAIPVC+ V++LIER+AYR LRNAPRLAPLITAIGVSILLQTFAM Sbjct: 61 APDLPGIVKLIIAILGAIPVCVAVNVLIERVAYRRLRNAPRLAPLITAIGVSILLQTFAM 120 Query: 121 MIWGRSPLPFPQVMPSDPVHIAGALISPTQIMLLILALAAMIGLVLIVEKTKMGRAMRAT 180 MIWGRSPLPFPQVMP +P+HI GALISPTQ+MLLILA A+M+ L L++EKTK+GRAMRAT Sbjct: 121 MIWGRSPLPFPQVMPGEPLHILGALISPTQVMLLILAAASMLLLALLIEKTKLGRAMRAT 180 Query: 181 AENPRIAGLMGVDANRVIIVTFAIGAALAAIAGVMWAANYSTAQFAMGFVPGLKAFSAAV 240 AENPR+AGLMGVD+NRVI++TF IGA LAAIAGVMWAANYS+AQFAMGFVPGLKAFSAAV Sbjct: 181 AENPRVAGLMGVDSNRVIVMTFVIGATLAAIAGVMWAANYSSAQFAMGFVPGLKAFSAAV 240 Query: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFVVLIIVLTLRPSGI 300 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTG FLGS+YQDIFAFVVLIIVLTLRPSGI Sbjct: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTLRPSGI 300 Query: 301 MGERVADRA 309 MGERVADRA Sbjct: 301 MGERVADRA 309 >gi|134096410|ref|YP_001101485.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 294 Score = 180 bits (457), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 184/294 (62%), Gaps = 4/294 (1%) Query: 17 MYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQVAPHLPGIVQLVIAIVG 76 +YA++A+G+T+ +GVL++I F+HGD LMVGA GL+ V + P I +L+ ++ Sbjct: 2 IYAMVAVGFTLFFGVLDVIKFSHGDTLMVGAFAGLTASTGVLMLDIGSPWI-RLLAVVLA 60 Query: 77 AIPVCIVVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTFAMMIW--GRSPLPFPQVM 134 A+ V ++ I + PL AP L L+ + + +++ + + G + PFP ++ Sbjct: 61 AVCVTGLLGAAIAKWLVLPLHKAPPLNTLLATLMLGTVMREAVRLFYPDGSNSQPFPSLL 120 Query: 135 PSDPVHIAGALISPTQIMLLILALAAMIGLVLIVEKTKMGRAMRATAENPRIAGLMGVDA 194 P+D + G + ++LL+ LA + G+ ++ +T++G A+RA A++ A LMG++ Sbjct: 121 PTDAIEFGGFALRADNVILLLSGLAIIAGVHFLITRTRLGMAIRAVAQDGETARLMGINF 180 Query: 195 NRVIIVTFAIGAALAAIAGVMWAANYSTAQFAMGFVPGLKAFSAAVLGGIGNIYGAMLGG 254 V+++TFA+G+ +AA+AGVM Y+ F +G + G+ F+AA+LGG+GNIYGA++GG Sbjct: 181 EAVVLLTFALGSGMAALAGVMNGLYYNEINFNVGLLLGVIGFAAAILGGLGNIYGAIIGG 240 Query: 255 ILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFVVLIIVLTLRPSGIMGERVADR 308 L ++ LG+ + L N + S Y+D+FAF V+II++ +P+G++ E+ ++R Sbjct: 241 FLFAGLQVLGSATLPALIPN-IPSAYKDVFAFAVVIILMAWKPTGLIAEKSSER 293 >gi|134095849|ref|YP_001100924.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 291 Score = 145 bits (366), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 169/308 (54%), Gaps = 26/308 (8%) Query: 1 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQ- 59 M F+Q +++GL +G++Y+L+ALG+ +++ +NFAHGD++MVGA +L VV Sbjct: 1 MSTFLQYVLSGLSIGAIYSLVALGFYIMWSACRSVNFAHGDVMMVGA-----VLAVVSND 55 Query: 60 --VAPHLPGIVQLVIAIVGAIPVCIVVSLLIERIAYRPL-RNAPRLAPLITAIGVSILLQ 116 ++P+ I I +I C++ +L+ER A RP + A + ++T I + I+++ Sbjct: 56 FGLSPY--------IGIPLSIVACVLYGVLVERFAVRPYTKEANAIGWMLTTIAIGIMVE 107 Query: 117 TFAMMIWGRSPLPFPQVMPSDPVHIAGALISPTQIMLLILALAAMIGLVLIVEKTKMGRA 176 +F + +G P P+ I GA I ++++ + + MIGL + +T +GRA Sbjct: 108 SFVTIKFGSFARALPSPGVDKPITIFGAGIYLQEMLIPLFVILFMIGLEVFYRRTMLGRA 167 Query: 177 MRATAENPRIAGLMGVDANRVIIVTFAIGAALAAIAGVMWAANYSTAQFAMGFVPGLKAF 236 MRA A N AG+MG++ V +FA+ A L IAG++ + MG + GLK F Sbjct: 168 MRAVAFNRIAAGMMGINVGMVTSFSFALAAGLGGIAGILIGPIIQVSS-TMGVLIGLKGF 226 Query: 237 SAAVLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFVVLIIVLTLR 296 + A++ I + G ++ G+L G++E GYI S +++ F ++I+VL + Sbjct: 227 AVAIMASITSARGVVITGLLYGVLEKFVEGYI--------SSAAREVVGFSIMILVLLMF 278 Query: 297 PSGIMGER 304 P G+ G + Sbjct: 279 PQGLFGRK 286 >gi|134093665|ref|YP_001098740.1| branched chain amino acid ABC transporter permease [Herminiimonas arsenicoxydans] Length = 293 Score = 106 bits (264), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/306 (28%), Positives = 157/306 (51%), Gaps = 19/306 (6%) Query: 1 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQV 60 M F ++ G+ ++ L+A G +++GV +IN A G I +GA G+ + + Sbjct: 1 MAPFFNILLAGVFQAAVLFLVASGLQLIFGVQRIINLACGSIYALGAYFGIFVTS--WAL 58 Query: 61 APHLPGIVQLV-IAIVGAIPVCIVVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTFA 119 + LP V L ++GA V ++ + +ER+ R + N P L+ V ++ Q Sbjct: 59 SKGLP--VHLFPFVLLGAGIVIGLIGIPLERLI-RTIYNRPESFQLLLTFAVMLMFQDVL 115 Query: 120 MMIWGRSPLPFPQVMPSDPVHIAGALISPT-QIMLLILALAAMIGLVLIVEKTKMGRAMR 178 WG P P V + + A + PT +M++ +A++ IG+ + KTK G+ +R Sbjct: 116 RFFWGADPQQLPNVSMTFGILSAFGVSMPTYNVMVIAVAVSLAIGMAYFLGKTKTGKILR 175 Query: 179 ATAENPRIAGLMGVDANRVIIVTFAIGAALAAIAGVMWAANYSTAQFAMGFVPGLKAFSA 238 ATAEN + MG++ RV ++ F +G L I G + N + A MG ++AF+ Sbjct: 176 ATAENRETSAAMGINVTRVYVMVFTLGTMLGTIGGALVIPN-AAASLEMGVELVVEAFAV 234 Query: 239 AVLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFA-FVVLIIVLTLRP 297 V+GG+G++ GA +G +++GLI +L A Y + +I A + +++ VL +P Sbjct: 235 VVIGGLGSMKGAAVGALIVGLIRALSAMYYPE----------AEILAIYAIVLAVLIWKP 284 Query: 298 SGIMGE 303 +G+ G+ Sbjct: 285 AGLYGK 290 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.329 0.144 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 468,846 Number of extensions: 16170 Number of successful extensions: 113 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 8 Length of query: 309 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 228 Effective length of database: 733,452 Effective search space: 167227056 Effective search space used: 167227056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)