BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0987.p
         (321 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095640|ref|YP_001100715.1| 1-hydroxy-2-methyl-2-(E)-buteny...   529   e-152

>gi|134095640|ref|YP_001100715.1| 1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate reductase [Herminiimonas arsenicoxydans]
          Length = 314

 Score =  529 bits (1363), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 252/315 (80%), Positives = 285/315 (90%), Gaps = 3/315 (0%)

Query: 3   MDKAESEILLAQPRGFCAGVDRAIEIVERALAQFGAPIYVRHEIVHNAYVVNDLRAKGAV 62
           MDK   EILLAQPRGFCAGVDRAIEIVERAL +FGAPIYVRHEIVHNAYVV+DLR KGA+
Sbjct: 1   MDK---EILLAQPRGFCAGVDRAIEIVERALIEFGAPIYVRHEIVHNAYVVSDLRNKGAI 57

Query: 63  FIEELADVPAGNTVIFSAHGVSKAIQAEAAERGLTVFDATCPLVTKVHMEVAKMRREGRE 122
           FIEEL DVPAGNTV+FSAHGVSKA+QAEA ERGL VFDATCPLVTKVH+EV KMRR+GRE
Sbjct: 58  FIEELEDVPAGNTVVFSAHGVSKAVQAEANERGLRVFDATCPLVTKVHIEVEKMRRDGRE 117

Query: 123 IIMIGHAGHPEVEGTMGQTEAGMHLVETVEDVARLQVADPALLAYVSQTTLSVDDTADII 182
           I+MIGH GHPEVEGTMGQTE GMHLVETV+DV  LQV +P L++YV+QTTLS+DDTAD+I
Sbjct: 118 IVMIGHDGHPEVEGTMGQTEDGMHLVETVDDVKNLQVKNPELVSYVTQTTLSIDDTADVI 177

Query: 183 AALRARFPAIAEPKKGDICYATTNRQEAVKFMAPQVEVVIVVGSPNSSNSNRLRELAEKK 242
           AAL+ ++P I+EPKK DICYATTNRQEAVKFMAPQV+VVIVVGSPNSSNSNRLRE+A KK
Sbjct: 178 AALKNKYPHISEPKKADICYATTNRQEAVKFMAPQVDVVIVVGSPNSSNSNRLREVARKK 237

Query: 243 GVPAFMVDNATLIDPQWIVGRQRIGVTAGASAPEVLVQAVIDRIKEIGARSVRVLDGIEE 302
            VP++MVDNA+ IDP W+  +QRIGVTAGASAPEVLVQAVID++KE GA+SVR L+G+EE
Sbjct: 238 NVPSYMVDNASEIDPAWLQDKQRIGVTAGASAPEVLVQAVIDKLKEYGAKSVRTLEGVEE 297

Query: 303 NVTFPLPKGLGSRPA 317
           +V FPLPKGL  + A
Sbjct: 298 HVAFPLPKGLVRKTA 312


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 585,973
Number of extensions: 23563
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 239
Effective length of database: 730,157
Effective search space: 174507523
Effective search space used: 174507523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)