BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0980.p
         (191 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095292|ref|YP_001100367.1| endonuclease Nuc [Herminiimonas...    86   1e-18

>gi|134095292|ref|YP_001100367.1| endonuclease Nuc [Herminiimonas
           arsenicoxydans]
          Length = 194

 Score = 85.9 bits (211), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 78/146 (53%), Gaps = 5/146 (3%)

Query: 37  AQGTVQSAFAPWDDIEALIVGQLDGARRQILVQAYLLTSRPITDALVAARKRGIDVRVLM 96
           A   ++SAF+P    E L++  +  + + I + AY  TS  +  AL+ A+KRG+DVRVL+
Sbjct: 40  ATALIESAFSPNAGAEKLVLKVIHASNKSIRLAAYSFTSPTVAKALLMAKKRGVDVRVLV 99

Query: 97  D-AGQLDKNATDRLRQLRAAGIPVWLETEYRNAHNKVIVIDAALPTATVITGSYNFTWSA 155
           D  G   K     L  L    IP    + Y   H+K IV D       V  GS+N++ +A
Sbjct: 100 DEKGNKGKANLAALNLLVNGSIPTRTISSYAIHHDKYIVSD----EQHVQNGSFNYSQAA 155

Query: 156 QHKNAENVLILGKNPPLAARYASNWQ 181
              N+ENVL++  NP LAA +  +WQ
Sbjct: 156 AKSNSENVLVVWNNPDLAASFQHHWQ 181


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 329,168
Number of extensions: 12073
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 114
Effective length of database: 746,632
Effective search space: 85116048
Effective search space used: 85116048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)