BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0978.p
         (203 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095649|ref|YP_001100724.1| phosphoribosylglycinamide formy...   305   1e-84
gi|134094227|ref|YP_001099302.1| formyltetrahydrofolate deformyl...    92   3e-20

>gi|134095649|ref|YP_001100724.1| phosphoribosylglycinamide
           formyltransferase [Herminiimonas arsenicoxydans]
          Length = 209

 Score =  305 bits (781), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 149/195 (76%), Positives = 171/195 (87%), Gaps = 1/195 (0%)

Query: 1   MRSIVILISGRGSNMEAIVRAAQAERWPARIAAVISNRADASGLEFAASHGIATAVIANR 60
           MR IVILISGRGSNMEAI+RAAQ E+WPA+I AV+SNRADASGL++AA HGI   V+ ++
Sbjct: 1   MRRIVILISGRGSNMEAIIRAAQDEKWPAKIVAVVSNRADASGLQYAAEHGIPAIVVPHK 60

Query: 61  DYPTRDQFDAALRAQIDTFAPDLVVLAGFMRILTAPFVNHYQGRMLNIHPSLLPSFPGLA 120
           DY TR+ FDAAL+++ID F+PDLVVLAGFMR+LT+ FV HY GRMLNIHPSLLPSF GLA
Sbjct: 61  DYATREAFDAALQSRIDEFSPDLVVLAGFMRVLTSRFVAHYAGRMLNIHPSLLPSFVGLA 120

Query: 121 THRQALAAGVKLHGATVHFVTPDLDHGPIVAQAAVPVLEDDSEETLAERVLEQEHVIYPR 180
           THRQALAAGV +HGATVHFVT DLDHGPIVAQA VPVL DD+E TLA RVLEQEH+IYPR
Sbjct: 121 THRQALAAGVTIHGATVHFVTADLDHGPIVAQATVPVLPDDTETTLAARVLEQEHIIYPR 180

Query: 181 AVRWFVQGRLAL-DG 194
            +R FV+GR+AL DG
Sbjct: 181 VIRAFVEGRVALTDG 195


>gi|134094227|ref|YP_001099302.1| formyltetrahydrofolate deformylase
           [Herminiimonas arsenicoxydans]
          Length = 288

 Score = 91.7 bits (226), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 100/200 (50%), Gaps = 13/200 (6%)

Query: 4   IVILISGRGSNMEAIVRAAQAERWPARIAAVISNRADASGLEFAASHGI-------ATAV 56
           +++++S  G  +  ++   ++   P  I A+ISN  D    + AAS+ I       AT  
Sbjct: 90  MLLMVSSIGHCLNDLLFRYKSGLLPVDIPAIISNHTDF--YQLAASYNIPFHHLPLATGA 147

Query: 57  IANRDYPTRDQFDAALRAQIDTFAPDLVVLAGFMRILTAPFVNHYQGRMLNIHPSLLPSF 116
             +       +    ++A       DL+VLA +M+IL+       +GR +NIH S LPSF
Sbjct: 148 PESAKRMQEQRILEIVKAA----DIDLIVLARYMQILSPEMCAALEGRAINIHHSFLPSF 203

Query: 117 PGLATHRQALAAGVKLHGATVHFVTPDLDHGPIVAQAAVPVLEDDSEETLAERVLEQEHV 176
            G   + QA   GVKL GAT HFVT  LD GPI+ Q    V       TL     + E V
Sbjct: 204 KGAKPYYQAHDRGVKLIGATAHFVTGHLDEGPIIEQDVARVDHAMDPATLTAIGRDVECV 263

Query: 177 IYPRAVRWFVQGRLALDGAR 196
           +  RAV++FV+ R+ L+G +
Sbjct: 264 VLARAVKYFVEHRILLNGHK 283


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 391,567
Number of extensions: 15931
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 126
Effective length of database: 746,632
Effective search space: 94075632
Effective search space used: 94075632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)