BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0977.p
         (132 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095650|ref|YP_001100725.1| hypothetical protein HEAR2476 [...   223   3e-60

>gi|134095650|ref|YP_001100725.1| hypothetical protein HEAR2476
           [Herminiimonas arsenicoxydans]
          Length = 132

 Score =  223 bits (568), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 108/132 (81%), Positives = 115/132 (87%)

Query: 1   MSLFKTVPPNIVQSIRAFRVNELQQEAAHLQQHFLYAYCADALTKQQVLTTIATAFHFPR 60
           MSLFKTVP N+VQSIRAFRV +LQ EAA L QHFLYA+CA A TKQQVL  IA AFHFPR
Sbjct: 1   MSLFKTVPSNVVQSIRAFRVADLQAEAAQLGQHFLYAHCAHATTKQQVLAIIAEAFHFPR 60

Query: 61  HFGKNFDALHDCLTDLTHKAGKQIGFVVVLEQLPNTQKFDKEARETLLDVFRDAADYWAE 120
           HFGKNFDAL DCLT L HKAG Q GF+VVLEQLPNT KFDKEARETLLDVFRDAAD+WA+
Sbjct: 61  HFGKNFDALSDCLTSLAHKAGPQPGFLVVLEQLPNTPKFDKEARETLLDVFRDAADFWAD 120

Query: 121 KKVPFRVFYSFQ 132
           KK+ FRVFYSFQ
Sbjct: 121 KKIAFRVFYSFQ 132


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 230,408
Number of extensions: 7929
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 60
Effective length of database: 763,107
Effective search space: 45786420
Effective search space used: 45786420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 124 (52.4 bits)