BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0975.p
         (401 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095652|ref|YP_001100727.1| hypothetical protein HEAR2478 [...   555   e-159

>gi|134095652|ref|YP_001100727.1| hypothetical protein HEAR2478
           [Herminiimonas arsenicoxydans]
          Length = 392

 Score =  555 bits (1430), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 262/385 (68%), Positives = 319/385 (82%), Gaps = 1/385 (0%)

Query: 5   EHKTGLILTGGGARAAYQVGVLNAISMILLEAGWPVHSNPFPIICGTSAGAINGTALACR 64
           + K GL+LTGGGARAAYQVGVL ++S IL  AGW    NP+ IICGTSAGAIN TALAC 
Sbjct: 4   QKKIGLVLTGGGARAAYQVGVLQSVSEILRGAGWAPERNPYDIICGTSAGAINATALACH 63

Query: 65  ADDFGEAVRELMAVWSNFKVEQVYRADSLGVIRSGARWLSLFSFGWLLRKWRANPPNSLL 124
           ADDF   + ++++VW +F  EQVYRADSLGV+RSGA+WLSL SFGWL+R+W+ANPPNSLL
Sbjct: 64  ADDFSAGLDQVVSVWEHFTAEQVYRADSLGVLRSGAKWLSLLSFGWLMRQWKANPPNSLL 123

Query: 125 DNTPLVSMLHRLLDLPRLDAALEQGQLHALAVTASSYTSGQHITFYQCAEEIEPWRRTQR 184
           DNTPLVS+L+R+L+LPRLDAAL  G+LHALAVTASSYT+G+HITFYQ   +IEPW RTQR
Sbjct: 124 DNTPLVSLLNRMLNLPRLDAALMDGKLHALAVTASSYTAGKHITFYQSEADIEPWVRTQR 183

Query: 185 LAMRDQIGIDHLLASSAIPFIFPAIPVYIDGRCEYCGDGSMRQIAPISPAIHLGATKVLI 244
           +A+R QIG++HLLASSAIP IFPA P+Y +GR EY GDGSMRQ+APISPAIHLGA KVL+
Sbjct: 184 VAIRSQIGVEHLLASSAIPLIFPATPIYCEGRREYFGDGSMRQMAPISPAIHLGADKVLV 243

Query: 245 IGAGRMGEKGEQAPTNTPHYPSLAQVAGHAMSGIFLDGLSADIERINRVNQTLSVLNEEQ 304
           IGAGR+ E     P     YPSLAQ+AGHAMS IFLD ++ DIER+NR+NQTLS+L++EQ
Sbjct: 244 IGAGRLLEPAID-PAIQAQYPSLAQIAGHAMSSIFLDSIAGDIERLNRINQTLSLLSDEQ 302

Query: 305 RRHTPLKPIRTLVISPSHRIDSIASRHVLNLPRPIRTMLGGIGATEARGSALASYLLFEQ 364
           +  TPL+P+  L I+PS R+D+IASRH+ +LPRP+R +L  IGATE RG+ALASYLLFE+
Sbjct: 303 KSKTPLRPVEMLTIAPSERLDTIASRHIGSLPRPVRMLLAAIGATEVRGAALASYLLFEK 362

Query: 365 SFTRELIALGQSDTYAKREEVLAFF 389
           S+T ELIALG+ D  A + E+L FF
Sbjct: 363 SYTCELIALGRRDAQAHKNEILDFF 387


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 760,429
Number of extensions: 30643
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 317
Effective length of database: 723,567
Effective search space: 229370739
Effective search space used: 229370739
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)