BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0970.p
         (344 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095664|ref|YP_001100739.1| tetraacyldisaccharide 4'-kinase...   377   e-106

>gi|134095664|ref|YP_001100739.1| tetraacyldisaccharide 4'-kinase
           [Herminiimonas arsenicoxydans]
          Length = 356

 Score =  377 bits (967), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/352 (59%), Positives = 238/352 (67%), Gaps = 16/352 (4%)

Query: 1   MAQSRPSAEAILSRAWQGRGPLACLLWPLSLLFGAVAALRRALFALGIKRAQRLPVPVIV 60
           +A  R + E    R W  RG  A LL PLS +FG ++ALRR  +  GI +AQR+ VPVIV
Sbjct: 3   LALQRSTLEEFFKRTWARRGLAAWLLRPLSAVFGVLSALRRLCYRFGIAKAQRMRVPVIV 62

Query: 61  VGNVFVGGTGKTPFAIWLIQALRAAGFHPGVISRGYGGGVEQTLVVHSGSAAAQVGDEPL 120
           VGN+FVGGTGKTP  IWL Q LR AGFHPGVISRGYG   +    V   + A +VGDEPL
Sbjct: 63  VGNIFVGGTGKTPLTIWLAQTLRQAGFHPGVISRGYGASSDVPRAVTPDAQAREVGDEPL 122

Query: 121 LIVQRTGVPLVVGRRRVQAGRALLAAHPEVDVIISDDGLQHYALARDIEIVLSDARGVGN 180
           LI  RT  P++VGR RV   +ALLAAHP+VDVIISDDGLQHY LARDIEI+L D RG GN
Sbjct: 123 LIAHRTQCPVMVGRDRVAVAQALLAAHPQVDVIISDDGLQHYRLARDIEIMLFDGRGNGN 182

Query: 181 GWLLPAGPLREPAWRRRDFSVLNVGVGQQGAAPAGVYAMQLQADYALQLAPPAARKPL-- 238
           GWLLPAGPLREP  RRRDF+V+N G  ++ A P  V  M L    A  LA  A   PL  
Sbjct: 183 GWLLPAGPLREPVSRRRDFTVIN-GSPEETAMPPDVIQMHLSGVMAEPLA--ATNLPLED 239

Query: 239 -----------AQMGEGGLRLAAVAGIGNPGRFFATLEGAGLQVSHHPLPDHYDFAIDPF 287
                      A  G    R+ A AGIGNP RFFA L  AGLQ    PLPDHYDF  +PF
Sbjct: 240 VPSRALRSFSAASTGFSPARILAAAGIGNPERFFAQLRAAGLQFDEMPLPDHYDFVDNPF 299

Query: 288 AGLAADVILITEKDAVKCRAIEAIRNDPRIWVVPVTARIDSALAQHIVEKLR 339
           A + ADVILITEKDAVKCR  +A+RNDPR+WVVPVTA +D A A+ IVEKLR
Sbjct: 300 AAVNADVILITEKDAVKCRQNDALRNDPRVWVVPVTAHLDDAFAEQIVEKLR 351


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 563,872
Number of extensions: 20662
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 262
Effective length of database: 730,157
Effective search space: 191301134
Effective search space used: 191301134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)