BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0968.p
         (201 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095666|ref|YP_001100741.1| putative biopolymer transport e...   325   7e-91
gi|134095826|ref|YP_001100901.1| biopolymer transport ExbB prote...    56   1e-09
gi|134095581|ref|YP_001100656.1| inner membrane protein [Hermini...    54   4e-09

>gi|134095666|ref|YP_001100741.1| putative biopolymer transport
           exbB-like protein [Herminiimonas arsenicoxydans]
          Length = 203

 Score =  325 bits (834), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 159/203 (78%), Positives = 179/203 (88%), Gaps = 2/203 (0%)

Query: 1   LLAIILAAGWPIWPLLIASIIGLALVIERLVYLRRARILPPDLLGEVVRVYQSGRVTEDV 60
           +LAII AAGWPIW LLIAS+I L L+IER +YLRR RILPP LL EVVRVY +G++  +V
Sbjct: 1   MLAIIHAAGWPIWLLLIASVIALTLIIERSLYLRRRRILPPSLLEEVVRVYHNGKIDANV 60

Query: 61  IDKLEQNSPLGQVLAAGLRNVDAPREVMKEAIEEAGQGAAHRLERFLTTLGTIASLAPLM 120
           +  LE+NSPLG+VLAAGLRNV+APR+VMKE+IEEAG+G AH LERFLTTLGTIA+LAPLM
Sbjct: 61  VATLEKNSPLGRVLAAGLRNVNAPRDVMKESIEEAGRGTAHELERFLTTLGTIATLAPLM 120

Query: 121 GLFGTVVGMIEIFASQNAAGT--NPAQLAHGISIALYNTGFGLAIAMPALVFYRHFRALV 178
           GLFGTVVGMIEIF SQNA GT  NP QLAHGISIALYNTGFGLAIAMP+LVFYRHFRALV
Sbjct: 121 GLFGTVVGMIEIFGSQNATGTGANPTQLAHGISIALYNTGFGLAIAMPSLVFYRHFRALV 180

Query: 179 DGFVVDMEQQAVKFVDIVHDVRR 201
           D F++DMEQQAVKFVD VH  R+
Sbjct: 181 DSFIIDMEQQAVKFVDTVHGARK 203


>gi|134095826|ref|YP_001100901.1| biopolymer transport ExbB protein
           [Herminiimonas arsenicoxydans]
          Length = 230

 Score = 55.8 bits (133), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 9/115 (7%)

Query: 80  NVDAPREVMKEAIEEAGQGAAHRLERFLTTLGTIASLAPLMGLFGTVVGMIEIFASQNAA 139
           N D P E++   + +     + RLE  LT L ++ S AP +GLFGTV G+     + +A+
Sbjct: 106 NTD-PGELITRTLRQEINRVSSRLENGLTLLASVGSTAPFIGLFGTVWGIYHALVAVSAS 164

Query: 140 GT-NPAQLAHGISIALYNTGFGLAIAMPALVFYRHFR-------ALVDGFVVDME 186
           GT    ++A  +  AL  T  GLA+A+PA++ Y  F        A +D F  D+ 
Sbjct: 165 GTVQIDKVAGPVGEALIMTALGLAVAIPAVLAYNAFTRVNRITLAELDAFAHDLH 219


>gi|134095581|ref|YP_001100656.1| inner membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 230

 Score = 54.3 bits (129), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 81  VDAPREVMKEAIEEAGQGAAHRLERFLTTLGTIASLAPLMGLFGTVVGMIEIFAS-QNAA 139
           +D  R  M+ A +    G    LE  L  L ++ S++P +GLFGTV G++  F    N  
Sbjct: 113 LDGARRAMRAAYQREMDG----LESHLAFLASVGSVSPYVGLFGTVWGIMNSFRGLANVQ 168

Query: 140 GTNPAQLAHGISIALYNTGFGLAIAMPALVFYRHFRALVDGFVVDMEQQAVKFVDIVHDV 199
               A +A GI+ AL  T  GL  A+PA+V Y  +   +D   +  E    +F +I+   
Sbjct: 169 QATLAAVAPGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAMRFESFVEEFSNILQRQ 228

Query: 200 RR 201
            R
Sbjct: 229 TR 230


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.142    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 391,877
Number of extensions: 16635
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 3
Length of query: 201
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 124
Effective length of database: 746,632
Effective search space: 92582368
Effective search space used: 92582368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)