BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0965.p
         (128 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096424|ref|YP_001101499.1| hypothetical protein HEAR3271 [...    71   2e-14

>gi|134096424|ref|YP_001101499.1| hypothetical protein HEAR3271
           [Herminiimonas arsenicoxydans]
          Length = 127

 Score = 71.2 bits (173), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 1/102 (0%)

Query: 16  IKARSHQLKSDEPEDNGGKDSGPAPYELLLAALASCTSLTLRMYADRKGWELGSISVDAH 75
           ++A  H L +D P   GG+D+G  P++LL AAL +CT++TL MYA RK   L  + V   
Sbjct: 16  VQAGPHTLIADAPSAFGGEDAGFVPHDLLAAALGACTAVTLNMYAGRKEIPLEKVDVTVV 75

Query: 76  FGRDDSGLETITRKISFGNTLTPEQLTRLAEICEKTPVTKTI 117
               D G+    R + +   L+ EQ   L +I +K PV K +
Sbjct: 76  AAEQD-GVYVFNRALHYHGNLSTEQKENLNKIADKCPVHKAL 116


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.129    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 220,401
Number of extensions: 7122
Number of successful extensions: 13
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 56
Effective length of database: 763,107
Effective search space: 42733992
Effective search space used: 42733992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)