BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0964.p (307 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094671|ref|YP_001099746.1| hypothetical protein HEAR1448 [... 431 e-122 gi|134093681|ref|YP_001098756.1| DedA family protein [Herminiimo... 67 1e-12 gi|134094328|ref|YP_001099403.1| putative alkaline phosphatase p... 59 2e-10 gi|134095876|ref|YP_001100951.1| putative thiosulfate sulfurtran... 55 3e-09 >gi|134094671|ref|YP_001099746.1| hypothetical protein HEAR1448 [Herminiimonas arsenicoxydans] Length = 308 Score = 431 bits (1107), Expect = e-122, Method: Compositional matrix adjust. Identities = 205/306 (66%), Positives = 253/306 (82%) Query: 1 MDTLYHLIEQYGLILVFVNVLVEQLGAPVPAYPTLIITGALSASGRYSPALLLLLAVCAA 60 M L LIEQYGL+ VF NVL+EQLGAP+PAYPTL+ITGAL G YS +LL +AV AA Sbjct: 1 MGFLLELIEQYGLLFVFANVLLEQLGAPIPAYPTLVITGALLGRGEYSAPMLLFVAVLAA 60 Query: 61 LMADYVWYLAGRRYGRQIMSRLCRISLSPDSCVRQTESIYLRWGARSLLLAKFIPGFASI 120 L+AD+ WYLAGRRYG ++M+RLCRISLSPDSCVRQTESIYLR+G SLL+AKFIPGFAS+ Sbjct: 61 LIADFAWYLAGRRYGARVMARLCRISLSPDSCVRQTESIYLRFGPASLLVAKFIPGFASV 120 Query: 121 ASALSGTMGTRRLSFVLWDAAGSALWAGLGIFLGSLFSSAVDDLLNVLAELGHYGMLMIA 180 ASAL+G +GTR + F+ +DA G+ALW+G IFLGSLFSSAV DLL++LA LG +G++++A Sbjct: 121 ASALAGAIGTRSVKFIFFDALGAALWSGSAIFLGSLFSSAVSDLLDILASLGKWGLVLVA 180 Query: 181 VALAAFVANKWWQRRRFRKSLAMARISVDELNTLLEAGNAPTIIDVRSPLSQQDGRIPGA 240 VALA ++A KWWQR F K L MARISVDEL+ LL+ GN PTIIDVRS +QQ GRIPGA Sbjct: 181 VALAIYIARKWWQRHSFLKDLRMARISVDELDQLLKQGNPPTIIDVRSDFAQQGGRIPGA 240 Query: 241 VTISNQEIQTFVFDGPVEGEVVVYCACPNEASAALVARQLMRRGYTRVRPLTGGIDAWRA 300 + +S+++I V + + EV+VYCACPNE SAA +AR+LM+RGYTRVRPLTGGI+AW A Sbjct: 241 MVLSDEDISALVINTETDSEVIVYCACPNEVSAARIARKLMQRGYTRVRPLTGGIEAWVA 300 Query: 301 AGYAID 306 AG+++D Sbjct: 301 AGFSVD 306 >gi|134093681|ref|YP_001098756.1| DedA family protein [Herminiimonas arsenicoxydans] Length = 213 Score = 67.0 bits (162), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 15/201 (7%) Query: 7 LIEQYG--LILVFVNVLVEQLGAPV----PAYPTLIITGALSASGRYSPALLLLLAVCAA 60 I QYG + LV ++ + G V P L I GA ASG + LLL L + AA Sbjct: 20 FIAQYGALIYLVLFTIIFCETGLVVFPFLPGDTLLFIAGAFCASGGMNLWLLLSLLIVAA 79 Query: 61 LMADYVWYLAGRRYGRQIMSRLCRISLSPDSCVRQTESIYLRWGARSLLLAKFIPGFASI 120 ++ + V Y G+R G ++ + R + +++T S Y G ++L+LA+F+P + Sbjct: 80 ILGNTVNYWIGQRIGEKVFTHDYR--WLDRAALQKTHSFYENHGGKTLILARFLPIVRTF 137 Query: 121 ASALSGTMGTRRLSFVLWDAAGSALWAGLGIFLGSLFSS--AVDDLLNVLAELGHYGMLM 178 A ++G + F ++ G+ LW L + G LF + + D LN + +G G Sbjct: 138 APFVAGVSKMTFVRFQFFNVTGAVLWVALLVVGGYLFGNIPIIRDHLNTIVLVG-VGAAA 196 Query: 179 IAVALAAFVANKWWQRRRFRK 199 I VAL A W +RF+K Sbjct: 197 IPVALGAL----WKLAQRFKK 213 >gi|134094328|ref|YP_001099403.1| putative alkaline phosphatase protein [Herminiimonas arsenicoxydans] Length = 200 Score = 59.3 bits (142), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/191 (21%), Positives = 90/191 (47%), Gaps = 7/191 (3%) Query: 1 MDTLYHLIEQYGLILVFVNVLVEQLGAPVPAYPTLIITGALSASGRYSPALLLLLAVCAA 60 +++ ++ Q G + +F+ +L E + P+P+ + + G +SA G + L++L + Sbjct: 2 FNSIVDIVSQSGYLGIFLLMLAENVFPPIPSELIMPLAGFVSARGELNIVLVILAGTAGS 61 Query: 61 LMADYVWYLAGRRYGRQIMSRLCR-----ISLSPDSCVRQTESIYLRWGARSLLLAKFIP 115 ++ WY AG +G+ + R+ ++LS + + R+GA ++ + IP Sbjct: 62 VVGALPWYYAGAIFGQHRLKRIANKHGRWMTLS-SRDIDVASMWFARYGAAAVFFGRLIP 120 Query: 116 GFASIASALSGTMGTRRLSFVLWDAAGSALWAGLGIFLGSLFSSAVDDLLNVLAELGHYG 175 ++ S +G + L F+ + GS +W L G L S D + + + G Sbjct: 121 AIRTLISVPAGIVHMPMLPFLAYSTIGSLIWTALLAVTGYLMQSQYDQVEHYMDPFSK-G 179 Query: 176 MLMIAVALAAF 186 +L++A+ + + Sbjct: 180 VLLLAITIYVY 190 >gi|134095876|ref|YP_001100951.1| putative thiosulfate sulfurtransferase [Herminiimonas arsenicoxydans] Length = 107 Score = 55.5 bits (132), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 203 MARISVDELNTLLE--AGNAPTIIDVRSPLSQQDGRIPGAVTISNQEIQTFVFDGPVEGE 260 M I+ EL LL +G A ++DVR P Q RI GA++I I + ++ + Sbjct: 1 MQHITAPELAALLADGSGKARILLDVREPWEYQTCRIEGAISIPMNTIPDQL--AQLDKD 58 Query: 261 VVVYCACPNEASAALVARQLMRRGYTRVRPLTGGIDAW 298 + C C + A + VA L +GYT V LTGGI AW Sbjct: 59 AAIVCICHHGARSMRVAHFLESQGYTHVTNLTGGIHAW 96 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 542,681 Number of extensions: 19967 Number of successful extensions: 107 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 4 Length of query: 307 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 226 Effective length of database: 733,452 Effective search space: 165760152 Effective search space used: 165760152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)