BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0958.p
         (269 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096464|ref|YP_001101539.1| putative oxidoreductase [Hermin...   115   2e-27

>gi|134096464|ref|YP_001101539.1| putative oxidoreductase
           [Herminiimonas arsenicoxydans]
          Length = 277

 Score =  115 bits (288), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 138/264 (52%), Gaps = 26/264 (9%)

Query: 5   SLPPLGLGTFRL-----KGQQVIDSVRTGLELGYRHIDTAQIYGN---EAEVGQAIADSG 56
           ++P LG GT+ +     +  + I ++R GL+ G   IDTA++YG+   E  VG+AIA   
Sbjct: 11  AVPVLGQGTWYMGDHASRRAEEIATLRLGLDFGMTLIDTAEMYGDGASEKLVGEAIAGR- 69

Query: 57  VARDALFVTTKIWTENLAGDKLIPSLKDSLYKLRLGQVDLTLIHWPAAHDALPVADYLHT 116
             RD +F+ +K+   N      I + + SL +L   ++DL L+HW       P A+ +  
Sbjct: 70  --RDEVFLVSKVLPSNATRHGTIAACERSLKRLGTDRIDLYLLHW---RGRTPFAETIAA 124

Query: 117 LAQAKAEGLTRQIGISNFTIAHMEQAIAAIGTEQIATNQVEIHPFLQNRKLVEF-----A 171
               +  G  R  G+SN  +  M +   A G E +A NQV    +   R+ +E+     A
Sbjct: 125 FEALQDAGKIRHWGVSNMDVDDMREIARASGGEAVAVNQVL---YNLTRRGIEYDLLPQA 181

Query: 172 RAKGIHLTAYMPLAYGKVMQDATLLEIAARHGVSAAQVALAWSLQQ-GFAVIPSSTRREN 230
           + +G+ + AY P+  G++ +   + +IA RHG S AQ+ALAW L+Q G   IP ++   +
Sbjct: 182 QQRGLPIMAYSPIEQGRLTESPEVQDIADRHGASPAQIALAWVLRQPGVIAIPKASTPAH 241

Query: 231 LAANLAAQTLRLSPAEMQAIAGLD 254
           +  N AA  ++L+    Q +A LD
Sbjct: 242 VQQNRAALDIKLT---AQDLAELD 262


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 512,269
Number of extensions: 20726
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 189
Effective length of database: 736,747
Effective search space: 139245183
Effective search space used: 139245183
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)