BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0957.p
         (441 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095258|ref|YP_001100333.1| putative serine protease [Hermi...    99   4e-22
gi|134096211|ref|YP_001101286.1| putative HtrA-like serine prote...    86   3e-18

>gi|134095258|ref|YP_001100333.1| putative serine protease
           [Herminiimonas arsenicoxydans]
          Length = 491

 Score = 99.0 bits (245), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 101/175 (57%), Gaps = 11/175 (6%)

Query: 262 RGSGTGFYIGSSGWLLTNYHVIGGAQSVRVRLPTGRELVAQVARADAARDIALLKTETPG 321
           RG G+GF I + G+++TN HV+ GA  V V L   RE  A++  AD   D+AL+K +   
Sbjct: 114 RGVGSGFIISADGYVMTNAHVVDGADEVYVTLTDKREFKAKIIGADKRTDVALVKIDGSN 173

Query: 322 VRPMPLRNGEP-GVGEDVYALGSPLGDAFNTTLTRGILSGVRMVRD----LEFLQSDVAI 376
           +  + + +     VGE V A+GSP G   + T+T GI+S     RD    L  +Q+DVA+
Sbjct: 174 LPRLTVGDSNKIRVGEWVIAIGSPFG--LDNTVTAGIVSA--KARDTGEYLPLIQTDVAV 229

Query: 377 LPGSSGGPLLDKSGQVVGITVAGLG-AKGLAGMNFFIPVGSAIERLHLQLQNQNQ 430
            PG+SGGPL++  G+V+GI       + G  G++F +P+  A+ R+  QL+   +
Sbjct: 230 NPGNSGGPLINMRGEVIGINSQIYSRSGGYMGISFAVPMDEAM-RVSDQLRTSGK 283


>gi|134096211|ref|YP_001101286.1| putative HtrA-like serine protease
           [Herminiimonas arsenicoxydans]
          Length = 391

 Score = 85.9 bits (211), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 96/171 (56%), Gaps = 10/171 (5%)

Query: 265 GTGFYIGSSGWLLTNYHVIGGAQSVRVRLPTGRELVAQVARADAARDIALLKTETPGVRP 324
           G+G  + + G++LTN HV+  A  + V L  GR+ +A+V  AD   D+A++K +   +  
Sbjct: 114 GSGVIVSAQGYILTNNHVVEAADEIEVALADGRKAIAKVVGADPETDLAVVKIDLDNLPA 173

Query: 325 MPLRNGEPG-VGEDVYALGSPLGDAFNTTLTRGILSG-----VRMVRDLE-FLQSDVAIL 377
           + L + E   VG+ V A+G+P G     T+T GI+S      + ++   E F+Q+D AI 
Sbjct: 174 ITLGHVEEARVGDVVLAIGNPFG--VGQTVTMGIISALGRNHLGILDAFENFIQTDAAIN 231

Query: 378 PGSSGGPLLDKSGQVVGITVAGLG-AKGLAGMNFFIPVGSAIERLHLQLQN 427
           PG+SGG L+D +G ++GI  A    + G  G+ F IPV +    +   ++N
Sbjct: 232 PGNSGGALIDANGNLLGINTAIYSRSGGSLGIGFAIPVTTVKSVMDAIIKN 282


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 866,493
Number of extensions: 37876
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 441
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 356
Effective length of database: 720,272
Effective search space: 256416832
Effective search space used: 256416832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)