BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0949.p
         (231 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095666|ref|YP_001100741.1| putative biopolymer transport e...    75   4e-15
gi|134095581|ref|YP_001100656.1| inner membrane protein [Hermini...    63   1e-11

>gi|134095666|ref|YP_001100741.1| putative biopolymer transport
           exbB-like protein [Herminiimonas arsenicoxydans]
          Length = 203

 Score = 74.7 bits (182), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 6/197 (3%)

Query: 6   LLSLANGSGGTLYLMLVLLLVALTVIVERTRYLANMQLGGNELIEAIRLSPQQGDI---T 62
           +L++ + +G  ++L+L+  ++ALT+I+ER+ YL   ++    L+E +      G I    
Sbjct: 1   MLAIIHAAGWPIWLLLIASVIALTLIIERSLYLRRRRILPPSLLEEVVRVYHNGKIDANV 60

Query: 63  LSARQATLPHARLFEVLQREPAQVDRATLDGHLEEAIMHEVPGLDRSLWLLDTVVTLAPL 122
           ++  +   P  R+     R      R  +   +EEA       L+R L  L T+ TLAPL
Sbjct: 61  VATLEKNSPLGRVLAAGLRN-VNAPRDVMKESIEEAGRGTAHELERFLTTLGTIATLAPL 119

Query: 123 LGLFGTIIGMFNAFHVLGDVQNGA--SQVTGGIAEALVATASGLFIAMIGLAFFNALHTR 180
           +GLFGT++GM   F        GA  +Q+  GI+ AL  T  GL IAM  L F+      
Sbjct: 120 MGLFGTVVGMIEIFGSQNATGTGANPTQLAHGISIALYNTGFGLAIAMPSLVFYRHFRAL 179

Query: 181 VRIVLHQLETIKIMLVN 197
           V   +  +E   +  V+
Sbjct: 180 VDSFIIDMEQQAVKFVD 196


>gi|134095581|ref|YP_001100656.1| inner membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 230

 Score = 62.8 bits (151), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 5/98 (5%)

Query: 82  EPAQVDRATLDGH---LEEAIMHEVPGLDRSLWLLDTVVTLAPLLGLFGTIIGMFNAFHV 138
           +P+Q     LDG    +  A   E+ GL+  L  L +V +++P +GLFGT+ G+ N+F  
Sbjct: 105 DPSQAS-VRLDGARRAMRAAYQREMDGLESHLAFLASVGSVSPYVGLFGTVWGIMNSFRG 163

Query: 139 LGDVQNGA-SQVTGGIAEALVATASGLFIAMIGLAFFN 175
           L +VQ    + V  GIAEAL+ATA GLF A+  +  +N
Sbjct: 164 LANVQQATLAAVAPGIAEALIATAIGLFAAIPAVVAYN 201


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 417,236
Number of extensions: 16021
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 3
Length of query: 231
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 152
Effective length of database: 740,042
Effective search space: 112486384
Effective search space used: 112486384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 127 (53.5 bits)