BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0947.p (218 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095287|ref|YP_001100362.1| two-component regulatory system... 211 2e-56 gi|134095857|ref|YP_001100932.1| two-component regulatory system... 180 5e-47 gi|134095798|ref|YP_001100873.1| OmpR family response regulator ... 179 1e-46 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 135 1e-33 gi|134096087|ref|YP_001101162.1| two-component system regulatory... 135 2e-33 >gi|134095287|ref|YP_001100362.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 220 Score = 211 bits (537), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 112/217 (51%), Positives = 152/217 (70%) Query: 1 MRLLLVEDDFMLGDSVRKGFYPLGFVVDWMRDGISAQAALEVESYAAVVLDLGLPGRNGL 60 MR+LL+EDD M+G+S+ +G + VDW+RDG +A+ A+ +Y V+LDLGLPG+ GL Sbjct: 1 MRVLLIEDDPMIGESLEEGLRKEQYAVDWVRDGHAAELAICSHTYDIVLLDLGLPGKQGL 60 Query: 61 EVLKKLRQDRDNTPVIIASACDAVQQRIAGLNAGADDYVNKPFDLEELAARIRALLRRVQ 120 VL R+ V+I SA DA R+ GL++GADDY+ KPFDL+EL AR+RALLRR Sbjct: 61 AVLTNYRRKHGEAAVLIISARDATAMRVQGLDSGADDYLVKPFDLDELFARMRALLRRRS 120 Query: 121 GRQSSTMVHGEVEFDPATQVVRHRGRRVALSAREMLVLSALIEKPEAVLSRAQLVERIYG 180 GR SS +++ E+ +PAT G V SARE +L ALI+ P V+SR QL ER+YG Sbjct: 121 GRVSSELIYRELTMNPATHEAAFNGASVHFSAREFALLLALIDPPGRVMSRTQLEERLYG 180 Query: 181 WNEEVDSNTIEVHIHALRKKIAPDVVRNIRGLGYTMA 217 WNEE++SNTIEV+IH LRKK+ D ++N+RG+GY + Sbjct: 181 WNEEIESNTIEVYIHGLRKKLGTDFIKNVRGVGYKIG 217 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 180 bits (456), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 89/218 (40%), Positives = 139/218 (63%), Gaps = 2/218 (0%) Query: 1 MRLLLVEDDFMLGDSVRKGFYPLGFVVDWMRDGISAQAALEVESYAAVVLDLGLPGRNGL 60 MR+L+VEDD +L ++ + G+ VD+ +G A AL ++YA V+LD+ LP +GL Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60 Query: 61 EVLKKLRQDRDNTPVIIASACDAVQQRIAGLNAGADDYVNKPFDLEELAARIRALLRRVQ 120 VL++LR+ + PV+I +A D + R+AGL+ GADDY+ KPFDL E AR+RAL+RR Q Sbjct: 61 AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120 Query: 121 GRQSSTMVHGEVEFDPATQVVRHRGRRVALSAREMLVLSALIEKPEAVLSRAQLVERIYG 180 ++ HG + FD + H V LS RE+ V L+ + V+++ Q+V+R++G Sbjct: 121 FDAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLFG 180 Query: 181 WNEEVDSNTIEVHIHALRKKIAPD--VVRNIRGLGYTM 216 W ++ SN IEV++H +RKK+ P +R +RG+GY + Sbjct: 181 WGDDGGSNAIEVYVHRMRKKLEPYNITIRTVRGMGYLL 218 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 179 bits (453), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 90/218 (41%), Positives = 142/218 (65%), Gaps = 2/218 (0%) Query: 1 MRLLLVEDDFMLGDSVRKGFYPLGFVVDWMRDGISAQAALEVESYAAVVLDLGLPGRNGL 60 MR+LL EDD +L D + + G+V D +++G+ A +AL + + ++LDLGLP +GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 EVLKKLRQDRDNTPVIIASACDAVQQRIAGLNAGADDYVNKPFDLEELAARIRALLRRVQ 120 EVL++LR PV+I +A D+++QR+ GL+ GADD++ KPF L EL AR+RAL RR Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 121 GRQSSTMVHGEVEFDPATQVVRHRGRRVALSAREMLVLSALIEKPEAVLSRAQLVERIYG 180 G + + HG + +D ++ + + LSARE+ +L L+++ ++S+ QLV+ + Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180 Query: 181 WNEEVDSNTIEVHIHALRKKIAPDVVR--NIRGLGYTM 216 W+EEV +N IEV++H LRKKI +R +RGLGY + Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEIGGLRIATVRGLGYCL 218 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 135 bits (340), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRLLLVEDDFMLGDSVRKGFYPLGFVVDWMRDGISAQAALEVESYAAVVLDLGLPGRNGL 60 M+LL+VED+ G+ +++G GF VD+ +G+ +Y ++LD+ LP +G Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGW 60 Query: 61 EVLKKLRQDRDNTPVIIASACDAVQQRIAGLNAGADDYVNKPFDLEELAARIRALLRR-V 119 ++L+ LR +N P + +A D V R+ GL GADDYV KPF EL AR+R LLRR + Sbjct: 61 KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGI 120 Query: 120 QGRQSSTMVHGEVEFDPATQVVRHRGRRVALSAREMLVLSALIEKPEAVLSRAQLVERIY 179 M ++ D A + G+R+ L+ +E L+L L+ VL R+ + +I+ Sbjct: 121 PSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180 Query: 180 GWNEEVDSNTIEVHIHALRKKI----APDVVRNIRGLGYTM 216 N D+N I+V I LR K+ P ++ IRG+GY + Sbjct: 181 DINFNSDTNVIDVAIRRLRSKMDDDYEPKLISTIRGVGYVL 221 >gi|134096087|ref|YP_001101162.1| two-component system regulatory protein [Herminiimonas arsenicoxydans] Length = 229 Score = 135 bits (340), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 136/223 (60%), Gaps = 8/223 (3%) Query: 1 MRLLLVEDDFMLGDSVRKGFYPLGFVVDWMRDGISAQAALEVESYAAVVLDLGLPGRNGL 60 MR+L++ED+ + ++ P G+V+D +G + A Y AV+LD+ LPG +GL Sbjct: 1 MRILIIEDNADIVANLYAFLEPRGYVLDCAANGYAGFALAAQHEYDAVILDIKLPGIDGL 60 Query: 61 EVLKKLRQD-RDNTPVIIASACDAVQQRIAGLNAGADDYVNKPFDLEELAARIRALLRRV 119 + +K+R + +++TPV++ +A D + ++AG ++GADDY+ KPF L E+ R++AL+RR Sbjct: 61 TLCRKMRDELQNDTPVLMLTARDTLDDKVAGFDSGADDYLVKPFSLLEVEVRLKALIRRA 120 Query: 120 QGRQSST--MVHGEVEFDPATQVVRHRGRRVALSAREMLVLSALIEKPEAVLSRAQLVER 177 +G+ T + G++ FD +T V+ G +AL+ +LS L+++ V+SR L Sbjct: 121 RGKNQGTNFLSVGDLIFDTSTYQVKRDGVPIALTKTGFKILSCLMKEAPKVVSRETLELE 180 Query: 178 IYGWNEEVDSNTIEVHIHALRKKIAPD----VVRNIRGLGYTM 216 ++G + DS+ + HIHALR+ + ++R ++G+GY + Sbjct: 181 VWG-DHPPDSDALRTHIHALRQALDKSHPFAMLRTVQGIGYRL 222 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 380,506 Number of extensions: 13680 Number of successful extensions: 116 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 22 Length of query: 218 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 140 Effective length of database: 743,337 Effective search space: 104067180 Effective search space used: 104067180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)