BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0946.p (462 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 258 6e-70 gi|134095799|ref|YP_001100874.1| putative two-component sensor k... 182 2e-47 gi|134095856|ref|YP_001100931.1| putative transmembrane sensor h... 153 2e-38 gi|134094344|ref|YP_001099419.1| two-component sensor [Herminiim... 107 2e-24 gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Hermin... 98 7e-22 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 258 bits (658), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 162/436 (37%), Positives = 243/436 (55%), Gaps = 22/436 (5%) Query: 34 LTDIYDDQMIQVALSVPDELIQAPQRADAELPGYESDD--CILQIWAHNGDLLYRTNRDI 91 + +++D Q+ Q+A ++P L A +LP + D ++QIW+ G+L++ + +I Sbjct: 1 MNEMFDYQLKQIAGALPAHL-----SAGHDLPIDDDPDQEILVQIWSTKGELIFTSAPNI 55 Query: 92 VLPPFSQAGFSTVHWHGAPWRIYVRKTGQHLVQVAQSLDGRREIAITHALHSLPPLLLFL 151 L GF ++ G WR+Y ++QVAQ R E+A + AL SL P L+ + Sbjct: 56 QLQQIEGFGFKSLSLRGKRWRVYSEADQDRIIQVAQPKAVRNEMAASMALRSLLPFLVMI 115 Query: 152 LLMALFIRRTVDRSLHSLHLLSHQVAARSPDSLEQIGEHGHCSDVRPLAKALNSLLERLG 211 ++ALFI V RSL+ LH L+ + RS ++LE + + +++P+ ALN LL RL Sbjct: 116 PVLALFIWIVVGRSLYPLHHLARAIGRRSSNALEPLPGERYPPELQPMLAALNDLLTRLD 175 Query: 212 IALKSHRHFIADASHELRTPLAALQIQALVVEQSLGSGQEQAALNDLKRGIQRTSHLVNQ 271 L + R F+ADA+HELRTPL AL++Q +VE+ Q L + R +HLV Q Sbjct: 176 QTLVTQRAFVADAAHELRTPLTALKLQLQLVERENDDRQRATGFRKLHERLNRATHLVQQ 235 Query: 272 LLTVSRLENGALEEHHAEIDLHALVRQAVIDLLPLARSHAINLGA-----EQLDSTTVVA 326 LLT++R E + +IDL L + V D P A ++LG + D+ + Sbjct: 236 LLTLARHEYRIADRSSQKIDLRQLTARVVSDYAPQAEHKGVDLGIAINDDQGSDAAMITG 295 Query: 327 APDQLGILVRNLIDNAVRYTPTGGQVDVSLR--VVEGRALLEVEDSGPGIPVEERQRVFE 384 D L IL+ NL+DNAVRYTP+ G+VDV++ + LL V+D+GPGIPV++++RVF+ Sbjct: 296 NQDSLRILLGNLVDNAVRYTPSHGRVDVTVNTSTADHTVLLRVKDNGPGIPVQDQERVFD 355 Query: 385 RFYRRQVQQSEGSGLGLAIVREIARQHGLRLGLDDSPRLGGLRVSVAFEI-------STR 437 RFYRR GSGLGL I + IA QH + L + GGL V+V F + S Sbjct: 356 RFYRRDGTGESGSGLGLFIAKTIATQHEATIELSTADSKGGLIVTVRFPLLCTSQTGSVS 415 Query: 438 PAPRSLAETASTSICT 453 P P ++A+ AS S T Sbjct: 416 PVPATIAK-ASVSPLT 430 >gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory protein [Herminiimonas arsenicoxydans] Length = 512 Score = 182 bits (463), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 117/312 (37%), Positives = 176/312 (56%), Gaps = 8/312 (2%) Query: 122 LVQVAQSLDGRREIAITHALHSLPPLLLFLLLMALFIRRTVDRSLHSLHLLSHQVAARSP 181 LVQV ++LD R ++ + P + L + + + + R L L L ++ AR P Sbjct: 180 LVQVGETLDKRSQLVNQIIKGVIVPEFIILPIALILVWFALTRGLRPLAELQQRIRARRP 239 Query: 182 DSLEQIGEHGHC-SDVRPLAKALNSLLERLGIALKSHRHFIADASHELRTPLAALQIQAL 240 D L I + GH ++ PL +LN +LERL ++K + FIADA+H+++TPLA +++Q+ Sbjct: 240 DDLSPI-DSGHVPEEIIPLVGSLNDMLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSE 298 Query: 241 VVEQSLGSGQEQAALNDLKRGIQRTSHLVNQLLTVSRLENGALEEHHAEI-DLHALVRQA 299 + + + +L L + + + +VNQLL ++R EN + ++ +L L R Sbjct: 299 LALRQTDHAEIHKSLEQLAKSSKSATRMVNQLLALARAENQTPQTKPMQVLELSELARDT 358 Query: 300 VIDLLPLARSHAINLGAEQLDSTTVVAAPD--QLGILVRNLIDNAVRYTPTGGQVDVSLR 357 V + + + + I+LG EQ D V+A D L L+ NLIDNA+ YTP GG V +R Sbjct: 359 VQNWVQTSFNRKIDLGFEQPDE-AVMARGDATMLHELLNNLIDNALSYTPAGGNATVRVR 417 Query: 358 VVE--GRALLEVEDSGPGIPVEERQRVFERFYRRQVQQSEGSGLGLAIVREIARQHGLRL 415 + G A LEVED+GPGI ER +FERFYR EGSGLGLAIVREIA QH + Sbjct: 418 TDQQAGLAFLEVEDNGPGIAPHERSHIFERFYRILGSNVEGSGLGLAIVREIALQHNAEI 477 Query: 416 GLDDSPRLGGLR 427 + ++PR G + Sbjct: 478 EILNNPRCQGQK 489 >gi|134095856|ref|YP_001100931.1| putative transmembrane sensor histidine kinase transcription regulator protein [Herminiimonas arsenicoxydans] Length = 448 Score = 153 bits (386), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/281 (37%), Positives = 148/281 (52%), Gaps = 2/281 (0%) Query: 160 RTVDRSLHSLHLLSHQVAARSPDSLEQIGEHGHCSDVRPLAKALNSLLERLGIALKSHRH 219 R V L L L +V RS L I +V PL A+N L+ R+ L Sbjct: 169 RGVAHGLAPLRKLQQEVGMRSHLDLSPIAADNVPGEVEPLVGAVNDLMTRVDAVLGFQGR 228 Query: 220 FIADASHELRTPLAALQIQALVVEQSLGSGQEQAALNDLKRGIQRTSHLVNQLLTVSRLE 279 FIAD +H+LRTP+A L+ + + Q + AL L +R S LV+QLL+++R E Sbjct: 229 FIADTAHQLRTPVAGLKAHIELALRENDLTQVKRALGHLYTSAERLSRLVSQLLSLARNE 288 Query: 280 NGALEEHHAEIDLHALVRQAVIDLLPLARSHAINLGAEQLDSTTVV-AAPDQLGILVRNL 338 + + A DL+ L +A + +PLA I+LG + ++ ++ ++ NL Sbjct: 289 PNNVAVNFAPFDLNQLALRAAQEWVPLAYKKQIDLGFDTAGQPVLLNGEAARVTEMINNL 348 Query: 339 IDNAVRYTPTGGQVDVSLRVVEGRALLEVEDSGPGIPVEERQRVFERFYRRQVQQSEGSG 398 +DNA+RYTP GG+V V +R E A L V D G IPVEER R+FERF+R EGSG Sbjct: 349 VDNAIRYTPPGGRVTVHVRQDE-HAHLIVSDDGARIPVEERTRIFERFHRLLGSHEEGSG 407 Query: 399 LGLAIVREIARQHGLRLGLDDSPRLGGLRVSVAFEISTRPA 439 LGLAIV EIA H + L+D G +V+F +S P Sbjct: 408 LGLAIVHEIATLHNATITLEDDVDGVGNTFTVSFPVSHAPG 448 >gi|134094344|ref|YP_001099419.1| two-component sensor [Herminiimonas arsenicoxydans] Length = 430 Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 122/229 (53%), Gaps = 12/229 (5%) Query: 218 RHFIADASHELRTPLAALQIQALVVEQSLGSGQEQAALNDLKRGI---QRTSHLVNQLLT 274 R FIA+ASHELRTPL + L + Q+ + ++ LK I QR +LV +LT Sbjct: 207 RDFIANASHELRTPLTVIN-GFLEIAQAQPDLDQAIRMSHLKLMIEQGQRMQNLVEDMLT 265 Query: 275 VSRLENGALEEHHAEIDLHALVRQAVIDLLPLARS-HAINLGAEQLDSTTVVAAPDQLGI 333 ++RLE+ +++H L+ Q + L+ H I+L +D + + D+L Sbjct: 266 LTRLESIDYPLRPEHVNIHNLLEQIRQEAEALSGGRHEISL---TIDGPDIEGSADELRS 322 Query: 334 LVRNLIDNAVRYTPTGGQVDVSLRVVEGRALLEVEDSGPGIPVEERQRVFERFYR---RQ 390 NL+ NAVRYTP G++D+ + V+D+G G+ E R+ ERFYR + Sbjct: 323 AFSNLVSNAVRYTPIHGRIDIKWQNTAAGPQFSVKDTGIGMRPEHLVRLTERFYRVDKSR 382 Query: 391 VQQSEGSGLGLAIVREIARQHGLRLGLDDSPRLGGLRVSVAFEISTRPA 439 ++++G+GLGLAIV+ + +HG L ++ P +G SV F+ PA Sbjct: 383 SRETQGTGLGLAIVKHVLLRHGAVLAIESQPDVGS-TFSVQFKTENLPA 430 >gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Herminiimonas arsenicoxydans] Length = 458 Score = 98.2 bits (243), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 13/227 (5%) Query: 194 SDVRPLAKALNSLLERLGIALKSHRHFIADASHELRTPLAALQIQA-LVVEQSLGSGQEQ 252 +++ LA LN++L+RL + F AD +HELRTP++ + Q +V+ QS + + Sbjct: 213 TEMTDLAVKLNAMLDRLQNDIARLTEFSADLAHELRTPISNMLTQTHVVLNQSRSTADYR 272 Query: 253 AALNDLKRGIQRTSHLVNQLLTVSRLENGALEEHHAEIDLHALVRQAVIDLL-PLARSHA 311 +L+ +QR + ++ +L +++ ENG A++++ A QA+++ LA Sbjct: 273 DSLSSNAEELQRLGNTISDMLFLAQTENGLALPSVAKLNM-ARECQALLEFYEALAEEKK 331 Query: 312 INLGAEQLDSTTVVAAPDQLGI--LVRNLIDNAVRYTPTGGQVDVSLRVVEGRALLEVED 369 + L E V DQL + NL+ NA+RYTP+ G + + + E + V++ Sbjct: 332 VVLRCEG----DAVVIGDQLMFRRALNNLLSNAIRYTPSYGTISIKITSAESGTTITVQN 387 Query: 370 SGPGIPVEERQRVFERFYR----RQVQQSEGSGLGLAIVREIARQHG 412 G IP E + +F+RF+R R+ +S+ +GLGL+I R I + HG Sbjct: 388 DGEEIPAEIQPHLFDRFFRADKSRKKSESDSAGLGLSITRAIMQAHG 434 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 768,561 Number of extensions: 30712 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 20 Length of query: 462 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 377 Effective length of database: 720,272 Effective search space: 271542544 Effective search space used: 271542544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)