BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0945.p
         (758 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093897|ref|YP_001098972.1| malic enzyme [Herminiimonas ars...   852   0.0  

>gi|134093897|ref|YP_001098972.1| malic enzyme [Herminiimonas
           arsenicoxydans]
          Length = 770

 Score =  852 bits (2201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/767 (56%), Positives = 557/767 (72%), Gaps = 17/767 (2%)

Query: 1   MTQHISAAEQL---LRDAAREYHRTPTRGKIEVRATKPLSNQRDLSLAYSPGVAYPCLDI 57
           M  +I   E+L   LR AA EYH  PT GKI V  TK ++NQRDL+LAY+PGVA  C +I
Sbjct: 1   MDSNIDKKEELRLQLRQAALEYHEFPTPGKISVTPTKQVTNQRDLALAYTPGVAVACEEI 60

Query: 58  EADPLKAFDYTSRGNLVAVISNGTAVLGLGNIGPLASKPVMEGKGCLFKKFAGVDVFDIE 117
            A+P  ++ YTSRGNLVAVI+NGTAVLGLGNIGPLA+KPVMEGKG LFKKFAG+DVFDIE
Sbjct: 61  AANPADSYRYTSRGNLVAVITNGTAVLGLGNIGPLAAKPVMEGKGVLFKKFAGIDVFDIE 120

Query: 118 LAENDPDKLVEIIAALEPTLGGINLEDIKAPECFYIEQKLSARMNIPVFHDDQHGTAIIS 177
           + E DPDKL +IIA+LEPT GGINLEDIKAPECFYIE+ L  RM IPVFHDDQHGTAII 
Sbjct: 121 INETDPDKLCDIIASLEPTFGGINLEDIKAPECFYIERTLRERMKIPVFHDDQHGTAIIV 180

Query: 178 SAALLNGLELVGKDIGAVKIAVSGAGAAAIACVEVMIGLGVKRENVYMVDSKGVIYEGRP 237
           +AA+LNGL++VGK I   K+ VSGAGAAA+AC+++++ LG   EN+++ D  GV+Y GR 
Sbjct: 181 AAAILNGLKVVGKTIQNTKLVVSGAGAAALACLDLLVDLGFPLENIFVTDLAGVVYHGRV 240

Query: 238 GGLDASKQRYAIKTEARTLADVVNGADVFLGCSAPGVLTAEMVKTMADKPIILALANPEP 297
             +D +K+R+A KT+AR LADV+ GADVFLG S  GVL  +MV  MAD+P+ILALANP P
Sbjct: 241 ELMDPAKERFAQKTDARKLADVIGGADVFLGVSGGGVLKPDMVAAMADRPLILALANPTP 300

Query: 298 EIRPELAKSVRPDCIIATGRSDYPNQVNNVLCFPYIFRGALDCGATKITEAMKLACVREI 357
           EI PE  ++VR D +IATGRSDYPNQVNNVLCFPYIFRGALDCGAT IT  M++A V  I
Sbjct: 301 EILPEEVRAVRSDAVIATGRSDYPNQVNNVLCFPYIFRGALDCGATTITREMEIAAVHAI 360

Query: 358 ADLAKAETSAEVSAAYPGKELVFGADYLIPTPFDSRLILKIAPAVAKAAAESGVATRPIT 417
           A LA+AE S  V+  Y    L FG DY+IP PFD RL++KIA AVAKAA E GVA RPI 
Sbjct: 361 AQLAQAEQSDIVATTYGINNLSFGPDYIIPMPFDPRLMIKIAMAVAKAAEECGVAARPIK 420

Query: 418 DYDAYRAELTRFIYQTGMFMQPVFNTAKRAA---QRVVYADGEDERVLRAVQFVADEGLA 474
           D +AY  +L +F+Y++G FM+P+F  AK      +R+VYA+ E+ERVLRAVQ V DE LA
Sbjct: 421 DMEAYADKLQQFVYRSGTFMKPIFQIAKSTPSDLKRIVYAEAEEERVLRAVQVVVDEKLA 480

Query: 475 APILVGRAAAIEAGIKKAGLRLKIGQNLQVIDPASDDRVAQYAAQY------QGGSEA-- 526
            PIL+GR A +   I++ GLR+K   +  +I+P  DDR   +   Y      +G +E   
Sbjct: 481 RPILIGRPAVLLQRIERFGLRIKPDIDFTIINPEHDDRYRDFWQTYLAMTLRKGVTEQYA 540

Query: 527 --DVRASSSLLAALMVKAGHADAMLCGLDGNYDGHLAHVEKVIGLKDGAQEFAALNAVLL 584
             ++R   +L+ A+ +   +AD M+CG  G  D HL +VE+V+G + G   +AA+N V++
Sbjct: 541 KLEMRRRHTLIGAMAIHKKYADGMICGTFGTTDLHLKYVEQVLGKRAGVNSYAAMNCVIM 600

Query: 585 PEQTLFITDTYVNDTPDAEQLARIAKAAAEEVARFGVPPKVAFLSHSNHGSSSRPSARKM 644
            ++ LF+ DT+VN+ P AEQLA I   AAEE+ RFG+PP+ A LSHSN GSS+  SA+KM
Sbjct: 601 SDRQLFLVDTHVNENPSAEQLAEITILAAEEMRRFGMPPRAALLSHSNFGSSNSESAQKM 660

Query: 645 AAAHEAFKKLAPEVESAGELHGDAALSEKIRHNAGLTDSGLTGAANVLVCPNLDAANILF 704
               +  ++ AP++E  GE+HGD A++  +     + DS L G AN+LV PN+D+ANI +
Sbjct: 661 RKVLQLVRERAPDLEIDGEMHGDLAMN-AVELKKAMPDSALKGDANLLVFPNIDSANIAY 719

Query: 705 NVLKTSSGQGTTIGPILLGAAAPVHVLTPSSTVRRVINMTALAAAKA 751
           N+LKT+ G G  IGPILLG   PVH+LTPS+TVRR++NMTAL  A A
Sbjct: 720 NLLKTTVGNGVAIGPILLGCDKPVHILTPSATVRRIVNMTALCVADA 766


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,269,592
Number of extensions: 48069
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 2
Length of query: 758
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 669
Effective length of database: 707,092
Effective search space: 473044548
Effective search space used: 473044548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)