BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0944.p (515 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 404 e-114 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 380 e-106 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 375 e-105 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 374 e-105 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 369 e-103 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 404 bits (1037), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/512 (49%), Positives = 337/512 (65%), Gaps = 2/512 (0%) Query: 4 FYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQGSL 63 F NL I +L ++F +++ L + + L+ V KA+ + + A + ++G + Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERLAQQWIKG-I 61 Query: 64 PPLRLNELELVTAVTPQERSAANQAIKARLDALAKQRTVFEQRMSEPEEKEQYAQFGKNL 123 + V P++ Q + A A++KQ+ E + E K+ A + Sbjct: 62 ETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAEKR 121 Query: 124 AAYIKVDEQLAEMAANQQYDETRALFKGESAKLYAAMVANLNAIVKINTSGSAQADAEAS 183 A Y + + + + + + A+ + A + ++ A+V + A Sbjct: 122 ATYTAIRDDVMNLREARGAELQNAI-ANKMKPAADAYIQSVEAVVNAQINNFEDAKGRVD 180 Query: 184 GVFRGAQRWIVGLLAATVAIGSLLAFVVAANVSRPLKEAVEIAQRVARGDLTLRIRPAGR 243 +++ A+ ++ L + +G +LA+++ ++++PL AV +A+ VA GDLT RI + Sbjct: 181 TIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRITVDSK 240 Query: 244 DETGRLMEALRAMNDSLRDIVSEVRQGTDTIATASNEIARGNLDLSNRTEQQAGSLEETA 303 DETG+L++AL+ MNDSL +++VR G DTIATASN+IA GNLDLS+RTE+QA SLEETA Sbjct: 241 DETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETA 300 Query: 304 SAMEQLTSTVTQNADNARQANQLAATASDIASHGGDVVGQVVQTMEGITESSRRIADIIS 363 S+ME+LTSTV QNADNARQANQLA TAS +A GG VV +VV TM+GI S+R+I DII Sbjct: 301 SSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIG 360 Query: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDDSVQ 423 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LIDDSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVD 420 Query: 424 KVSAGSELVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDETTQQ 483 KV GS+LV AG+TM EVV SV+RVTD++AEI AA+QEQS GI +VN AI QMD+ TQQ Sbjct: 421 KVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQ 480 Query: 484 NAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 NAALVE+AAAAA+SL QA NLA V FKL+ Sbjct: 481 NAALVEEAAAAAESLNEQAANLAQAVSIFKLD 512 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 380 bits (975), Expect = e-106, Method: Compositional matrix adjust. Identities = 245/491 (49%), Positives = 327/491 (66%), Gaps = 7/491 (1%) Query: 28 GLFAIKELKQVNKASGEIVSKWMPTMDAARE--LQGSLPPLRLNELELVTAVTPQERSAA 85 G I L+ +N AS +V + +A+ L S+ R L LV A P+ + Sbjct: 27 GATGIMRLENINGASRHLVDDSLSMQKSAQNWLLGTSVNASRT--LALVKASDPESQEFF 84 Query: 86 NQAIKARLDALAKQRTVFEQRMSEPEEKEQYAQFGKNLAAYIKVDEQLAEMAANQQYDET 145 +AI A+ + + + E R++ +EKE +A+ K +AYI + + + + A E Sbjct: 85 QKAITAQSKQITEIQKSIEDRINSDKEKELFAEVAKKRSAYIDIRKSILGVKAGGNIAEA 144 Query: 146 RALFKGESAKLYAAMVANLNAIVKINTSGSAQADAEASGVF-RGAQRWIVGLLAATVAIG 204 + + A V ++ ++ + AD + + G I+G + A + +G Sbjct: 145 NQMIDTKMVPALDAYVDSVKNVLGHYENEVKLADESITDDYLSGRMALIIGAVIA-ILLG 203 Query: 205 SLLAFVVAANVSRPLKEAVEIAQRVARGDLTLRIRPA-GRDETGRLMEALRAMNDSLRDI 263 +L+A+ + ++RPL EA+++A+ VA GDLT R A +DE G L+ AL M +L Sbjct: 204 TLIAWRLTVGITRPLHEALKVAESVAEGDLTARSDMAETQDEPGLLLSALGRMQANLVRT 263 Query: 264 VSEVRQGTDTIATASNEIARGNLDLSNRTEQQAGSLEETASAMEQLTSTVTQNADNARQA 323 V+++R GTDTIATAS+EIA GNLDLS+RTEQQA SLEETAS+ME+LTSTV QNADN+RQA Sbjct: 264 VTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNSRQA 323 Query: 324 NQLAATASDIASHGGDVVGQVVQTMEGITESSRRIADIISVIDGIAFQTNILALNAAVEA 383 NQLA AS +A GG VV QVV TM I S+++I DII VIDGIAFQTNILALNAAVEA Sbjct: 324 NQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDIIGVIDGIAFQTNILALNAAVEA 383 Query: 384 ARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDDSVQKVSAGSELVERAGSTMTEVV 443 ARAGEQGRGFAVVA+EVR+LAQRSA AAKEIK LI DSV+KV AGS+LV AG+TM E+V Sbjct: 384 ARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVEKVDAGSKLVAEAGTTMDEIV 443 Query: 444 ASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDETTQQNAALVEQAAAAADSLKGQAG 503 V+RV D++AEI+AA+QEQS GI +VN A++QMD+ TQQNAALVE+AAAAA+SL+ QA Sbjct: 444 DGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQQNAALVEEAAAAAESLQDQAR 503 Query: 504 NLAAVVGKFKL 514 NLA V F++ Sbjct: 504 NLAEAVSVFRV 514 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 375 bits (962), Expect = e-105, Method: Compositional matrix adjust. Identities = 246/517 (47%), Positives = 330/517 (63%), Gaps = 12/517 (2%) Query: 6 NLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQGSLPP 65 N++I +L L+ + + ++ G I ++ N I MP+ +A + L Sbjct: 4 NISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTRLLQ 63 Query: 66 LRLNELELVTAVTPQERSAANQAIKARLDALAKQRTVFEQRMSEPEEKEQYAQFGKNLAA 125 R L LV A+ P E + + +K + + +++ +S P E + + + A Sbjct: 64 ARAG-LNLV-AMRPHEE-GSERILKRAENFYLQSEEEWKKYLSLPIETLEERKVADEVTA 120 Query: 126 ----YIKVDEQ--LAEMAANQQYDETRALFKGESAKLYAAMVANLNAIVKINTSGSAQAD 179 Y+K EQ +A + A + +E + + L+ ++ + + +V++ +A Sbjct: 121 KRIRYLKEAEQGLIAALRAGRN-EEVEDILVNKMPPLFQSLTKSTDELVELQMKSAATGY 179 Query: 180 AEASGVFRGAQRW-IVGLLAATVAIGSLLAFVVAANVSRPLKEAVEIAQRVARGDLTLRI 238 ++ +F + +VG+L + + ++ AF + ++ PLKE + +A GDLT I Sbjct: 180 QDSQTLFHYFRIIAVVGVLLGLIGV-AIYAFFLIRAITGPLKEMLLHFDTIASGDLTSNI 238 Query: 239 RPAGRDETGRLMEALRAMNDSLRDIVSEVRQGTDTIATASNEIARGNLDLSNRTEQQAGS 298 R+E G LM L+ M L D V++VR+G+ I+TA+ EIA GNLDLS+RTEQQA S Sbjct: 239 EVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAAS 298 Query: 299 LEETASAMEQLTSTVTQNADNARQANQLAATASDIASHGGDVVGQVVQTMEGITESSRRI 358 LEETAS+ME+LTSTV QN DNARQANQLA +AS +A GG VV VV TM+ I S+R+I Sbjct: 299 LEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKI 358 Query: 359 ADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELI 418 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI Sbjct: 359 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLI 418 Query: 419 DDSVQKVSAGSELVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMD 478 DDSV KV AG+ LV AG+TMTEVV SV+RVTD+++EI AA+QEQS GI +VN AI QMD Sbjct: 419 DDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMD 478 Query: 479 ETTQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 E TQQNAALVEQAAAAA SL+ QA NL+ VV FKL+ Sbjct: 479 EVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQ 515 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 374 bits (959), Expect = e-105, Method: Compositional matrix adjust. Identities = 214/302 (70%), Positives = 246/302 (81%) Query: 214 NVSRPLKEAVEIAQRVARGDLTLRIRPAGRDETGRLMEALRAMNDSLRDIVSEVRQGTDT 273 +++RPL+ AVE+A+ VA GDL RI DETG+L++ALR MND L VSEVR G +T Sbjct: 215 SITRPLEYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIET 274 Query: 274 IATASNEIARGNLDLSNRTEQQAGSLEETASAMEQLTSTVTQNADNARQANQLAATASDI 333 IATASN+IA GNLDLS+RTE+QA SLEETAS+ME+LTSTV QNADNARQANQLA +AS + Sbjct: 275 IATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGV 334 Query: 334 ASHGGDVVGQVVQTMEGITESSRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGF 393 A GG VV QVV TME I S+++I DII VIDGIAFQTNILALNAAVEAARAGEQGRGF Sbjct: 335 AEKGGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGF 394 Query: 394 AVVASEVRSLAQRSAGAAKEIKELIDDSVQKVSAGSELVERAGSTMTEVVASVRRVTDVV 453 AVVASEVR+LAQRSA AAKEIK LI DSV KV GS+LV AG TM EVV SV+RVTD++ Sbjct: 395 AVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIM 454 Query: 454 AEISAATQEQSGGINEVNLAITQMDETTQQNAALVEQAAAAADSLKGQAGNLAAVVGKFK 513 +EI AA+QEQS GI +VN AI QMD+ TQQNAALVE+AAAAA+SL QAG LA V FK Sbjct: 455 SEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFK 514 Query: 514 LE 515 L+ Sbjct: 515 LD 516 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust. Identities = 246/522 (47%), Positives = 334/522 (63%), Gaps = 20/522 (3%) Query: 4 FYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIV-SKWMPTMDAARELQGS 62 N+ I L ++ L + G+ + L NKA + + +P +L Sbjct: 2 LKNITIKSLLLFVMGILSLLLIATGILGLTSLDTTNKALRSVYEDRTVPI----GQLNTV 57 Query: 63 LPPLRLNELELVTAVTPQERSAANQAIKARLDALAKQRT----VFEQRMSE---PEEKEQ 115 + +N+L+L ++ + ++DA+ K F+ M+ PE K Sbjct: 58 ITLSTINQLDLAASIYGDP-----GLVIPKMDAIEKHSKEINQAFDAFMASTLTPEAKVL 112 Query: 116 YAQFGKNLAAYIKVDEQLAEMAANQQYDETRA--LFKGESAKLYAAMVANLNAIVKINTS 173 +F + +++ Q A +AA++ + R + G +L + A + A++ + Sbjct: 113 ADKFAADRKIFLEKALQPA-IAASRGGNVLRVTEIVNGPMEELITPVRAGVAALIDLELR 171 Query: 174 GSAQADAEASGVFRGAQRWIVGLLAATVAIGSLLAFVVAANVSRPLKEAVEIAQRVARGD 233 + +A E+ F + +G + V + +AF + ++RPL +AV+IA+ VA GD Sbjct: 172 EAKKAFEESQTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGD 231 Query: 234 LTLRIRPAGRDETGRLMEALRAMNDSLRDIVSEVRQGTDTIATASNEIARGNLDLSNRTE 293 LT +I +ETG+L++AL+ MNDSL VS VR+GT+TI AS EIA GN DLS+RTE Sbjct: 232 LTQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTE 291 Query: 294 QQAGSLEETASAMEQLTSTVTQNADNARQANQLAATASDIASHGGDVVGQVVQTMEGITE 353 QAGSLEETAS+ME+LTSTV QNADNARQANQL +A+++A GG VV +VV TM I + Sbjct: 292 AQAGSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKD 351 Query: 354 SSRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKE 413 SSR+I DII VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAGAAKE Sbjct: 352 SSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKE 411 Query: 414 IKELIDDSVQKVSAGSELVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLA 473 IK LIDDSV KV AGS+LV++AGSTM E+V SV+ V D+++EI++A+QEQS GI +VN A Sbjct: 412 IKALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQA 471 Query: 474 ITQMDETTQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 I+QMDE TQQNAALVEQAAAAA S++ QA L+ V FKL+ Sbjct: 472 ISQMDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKLD 513 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.125 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 722,373 Number of extensions: 25034 Number of successful extensions: 186 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 15 Length of query: 515 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 429 Effective length of database: 716,977 Effective search space: 307583133 Effective search space used: 307583133 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)