BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0943.p (298 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 91 6e-20 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 84 7e-18 gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 80 1e-16 gi|134096369|ref|YP_001101444.1| putative HTH-type transcription... 74 7e-15 gi|134094120|ref|YP_001099195.1| putative transcriptional regula... 74 8e-15 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 90.9 bits (224), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 120/255 (47%), Gaps = 21/255 (8%) Query: 3 ELSLDQLRTLVSIVDLGTFSAAANALHLAQPTISLHVSELEARIGAPLLMRGSRRAQPTA 62 + L QLR V++ + F AA LH+ QP +S + LEA +G L R SR T Sbjct: 2 NIELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTP 61 Query: 63 LGTILIERARRLLRDVDDLLDVAQKHVEGKVGRVRLGTSTGVVVHLLPRVLKKLESAFPG 122 G+ L+ A+R+L+ L D+ ++ G GR+ L + +LP L++ ++PG Sbjct: 62 AGSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPG 121 Query: 123 IDVEVNILGSVETMDRLQQGTLDIGLVSTPIQKTKEIRISHWR--SDKMMAYLPASWDC- 179 +++++ + +D L QG +D+GL+ P+ ++++ + S+ ++ P Sbjct: 122 VEIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLKAL 181 Query: 180 --PATIRPAWLADKPMI---------FNDATTQMYRLTMEWFAAAGENPRARIELNYTEA 228 ++ LA+ P+I F+DA YR AG P E + Sbjct: 182 KGKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYR-------DAGLTPHIGQEAIQMQT 234 Query: 229 MKSLVSAGYGAAVLP 243 + LVSAG G A++P Sbjct: 235 IIGLVSAGMGIALVP 249 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 84.3 bits (207), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 124/249 (49%), Gaps = 11/249 (4%) Query: 4 LSLDQLRTLVSIVDLGTFSAAANALHLAQPTISLHVSELEARIGAPLLMRGSRRAQPTAL 63 ++L +L+ +V++ F AA A H+AQPT+S+ + +LE +G L RG T L Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 64 GTILIERARRLLRDVDDLLDVAQKHVEGKVGRVRLGTSTGVVVHLLPRVLKKLESAFPGI 123 G ++ +A R+L + ++A+++ + VG RLG + +LLP ++K + P + Sbjct: 61 GVQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQM 120 Query: 124 DVEVNILGSVETMDRLQQGTLDIGLVSTPIQKTKEIRISHWRSDKMMAYLPA--SWDCPA 181 + + +V+ +++L+QG +D +V+ PI + + + + + +P W + Sbjct: 121 PLVLQENFTVKLLEQLRQGEIDAAIVALPI-PDQGLLVQPVYDEPFVVAVPKHHPWAERS 179 Query: 182 TIRPAWLADKPMI-------FNDATTQMYRLTMEWFAAAGENPRARIELNYTEAMKSLVS 234 ++ L + M+ F D ++ M F+ +G+ E + E ++ +V+ Sbjct: 180 SVTTDNLKSETMLLLGNGHCFRDQVLEVCP-EMSRFSTSGDGIARTFEGSSLETIRHMVA 238 Query: 235 AGYGAAVLP 243 +G G VLP Sbjct: 239 SGIGITVLP 247 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 80.1 bits (196), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/264 (24%), Positives = 117/264 (44%), Gaps = 9/264 (3%) Query: 4 LSLDQLRTLVSIVDLGTFSAAANALHLAQPTISLHVSELEARIGAPLLMRGSRRAQPTAL 63 L L + V+ G+ +A A HL+ + S + +E +G PLL+RG R + T + Sbjct: 3 FDLTDLTLFLHSVETGSITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEATPV 62 Query: 64 GTILIERARRLLRDVDDLLDVAQKHVEGKVGRVRLGTSTGVVVHLLPRVLKKLESAFPGI 123 G L+ AR LR + + ++ +G G VR+ ++T + LP L + P + Sbjct: 63 GKALVHHARIALRQQERMRGELSEYAQGLKGHVRIMSNTVSLTEFLPEALSNFLATHPNV 122 Query: 124 DVEVNILGSVETMDRLQQGTLDIGLVSTPIQKTKEIRISHWRSDKMMAYLPASWDCPATI 183 ++++ S E + L +GT+DIG++S + + + D++ L + D P ++ Sbjct: 123 NIDLEERLSFEIVSALTEGTIDIGILSDSVDFSG-FETFPFHDDRLT--LVVARDHPLSV 179 Query: 184 RP----AWLADKPMIFNDATTQMYRLTMEWFAAAGENPRARIELNYTEAMKSLVSAGYGA 239 R A D I + + E A G + R+ L +A+ ++ G Sbjct: 180 RSSIHFAETLDYDFIGLQEGSALQEYLSEQAAKMGRRFKYRVRLRSFDAVCRMIERNVGI 239 Query: 240 AVLPLEQPLAAELGRHKDIRIVPL 263 V+P + A L + DI V + Sbjct: 240 GVVP--EAAANRLKKSMDIHTVSI 261 >gi|134096369|ref|YP_001101444.1| putative HTH-type transcriptional regulator protein ptxE [Herminiimonas arsenicoxydans] Length = 285 Score = 74.3 bits (181), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 139/294 (47%), Gaps = 13/294 (4%) Query: 4 LSLDQLRTLVSIVDLGTFSAAANALHLAQPTISLHVSELEARIGAPLLMRGSRRAQPTAL 63 + L++L T +++ G F AA L+Q T++ H+ +LE + A L+ R + ++ T Sbjct: 2 IDLEKLETFLTVAKHGGFRGAAMHRGLSQSTLTQHIKQLERSLNAVLIDRSNAVSKLTTE 61 Query: 64 GTILIERARRLLRDVDDLLDVAQKHVE-GKVGRVRLGTSTGVVVHLLPRVLKKLESAFPG 122 G L+ A+ L+D+++K + + + +G S+ V ++LL LK+ + G Sbjct: 62 GQALLPYAQM-------LIDISKKASDLFRRSSLTIGASSNVGIYLLQPYLKEFQRR-SG 113 Query: 123 IDVEVNILGSVETMDRLQQGTLDIGLVSTPIQKTKEIRISHWRSDKMMAYLPAS--WDCP 180 + +++ I + D+LQ+ +D+ ++ ++ S WRS++++ +P S W Sbjct: 114 VKLDIVIADNTSIADKLQRLEIDVAVMEWWDSRSG-FTASIWRSEELVLIVPTSHPWAGR 172 Query: 181 ATIRPAWLADKPMIFNDATTQMYRLTMEWFAAAGENPRARIELNYTEAMKSLVSAGYGAA 240 +TI+ L +I + T R+ A ++L TEA+K V AG G + Sbjct: 173 STIQLEELDGIELIGGEKGTGTGRIIERMLGARDLRINVAMQLGSTEAVKHAVKAGLGVS 232 Query: 241 VLPLEQPLAAELGRHKDIRIVPLSPVLRRHVGVAHRALATLDQATANVLETIRQ 294 V+ L R ++ + L++ + V HR + D + ++ +RQ Sbjct: 233 VVLAGAVTDEVLSRQFNVLRID-GDTLQKDIYVIHRNCTSADSVESKFVDFLRQ 285 >gi|134094120|ref|YP_001099195.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 284 Score = 73.9 bits (180), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 4/142 (2%) Query: 9 LRTLVSIVDLGTFSAAANALHLAQPTISLHVSELEARIGAPLLMRGSRRAQPTALGTILI 68 LR+ V++VD G+F+ AA+++HL Q TIS + LE ++G LL R R T G L+ Sbjct: 7 LRSFVAVVDTGSFTRAADSVHLTQSTISQQIRRLEMQVGCDLLNRSGRYVTTTLEGERLL 66 Query: 69 ERARRLLRDVDDLLD-VAQKHVEGKVGRVRLGTSTGVVVHLLPRVLKKLESAFPGIDVEV 127 A R+ + +D+ ++ +AQ GK G VRLG V L L + + +EV Sbjct: 67 RYAHRIAQLMDEAMEQIAQS--AGK-GEVRLGVPEDFVGRALTPTLSAFIDTYSAVRLEV 123 Query: 128 NILGSVETMDRLQQGTLDIGLV 149 + S E R Q+G LD+ L+ Sbjct: 124 SSGMSHELWQRFQRGELDLALI 145 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 535,545 Number of extensions: 21272 Number of successful extensions: 89 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 13 Length of query: 298 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 217 Effective length of database: 733,452 Effective search space: 159159084 Effective search space used: 159159084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)