BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0942.p
         (376 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095890|ref|YP_001100965.1| metal-activated pyridoxal prote...    77   1e-15

>gi|134095890|ref|YP_001100965.1| metal-activated pyridoxal protein
           [Herminiimonas arsenicoxydans]
          Length = 380

 Score = 77.0 bits (188), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 150/385 (38%), Gaps = 47/385 (12%)

Query: 2   NLASLPTPAALIDITRMEHNIARMQQRMDALGVRFRPHVKTTKCREVVQAQLQAGARGIT 61
           +LA + TPA L+D+   E N+  M       G+  RPH K  K   + +AQ+  GA GI 
Sbjct: 18  SLALVSTPALLLDLDAFEFNLCNMAALAKKNGLALRPHAKAHKSSTISRAQIALGAVGIC 77

Query: 62  VSTLKEAEQFFAEGITDIVYA---VGMAPTKLGQALALRRQGCALKIVADSAACAEAIVR 118
              L EA  F   GI +I  +   VG     +   LA   Q   L I  D  A  +AI +
Sbjct: 78  CQKLSEAYPFVRAGIDNIHISNEFVGADKVAMAVELAGLIQ---LSICVDHVAQVDAIGK 134

Query: 119 FGQEHDECFEVWIEIDVDGHRSGIAPEDATLLSVGSILHEGGMKLGGVIAHAGSSYDYDN 178
                     V  E+DV   R G+   +A    +  I    G++ GG+ A       Y+ 
Sbjct: 135 AASAAGVTIIVMPEVDVGHGRCGVDSNEALAALIDRIAAYPGLQFGGLQA-------YNG 187

Query: 179 DADLVRVAEQERAGCVHAAER-------LRAAGLPCEVVSIGSTPTALRAQHLQGITEVR 231
               +   EQ R     +A+R       L A G+   VVS   T T          TE++
Sbjct: 188 GIQHLATWEQRRLEAARSADRTAQYIQFLEARGVLSPVVSGAGTGTVEFDVASGVYTEMQ 247

Query: 232 AGVYAMFDLVMHNVGVNT-----LDDIALSVLTTVIGHQQEKGWAIVDAGWMAMSRDRG- 285
            G Y   D    + G N      +    L +L+T++   +    A+ D G   ++ D G 
Sbjct: 248 PGSYIFLD---GHYGSNEWAGEYMPQHGLFILSTIMSTAKPHK-AVCDVGLKGVAVDSGL 303

Query: 286 TQGRKHDFGYGQVCTEDGRVLEGYLMSGANQEHGILSRQGEADRDIAARLPIGTRLRILP 345
            + R  D+       ED           AN EHGIL    +  RD      +G R+ ++P
Sbjct: 304 PRVRAGDY-------ED-----KLRYVSANDEHGILQVAADDMRD-----HLGNRVMLVP 346

Query: 346 NHACATGAQYPEYHAIASDGSIATW 370
            H   T   + ++     D   A W
Sbjct: 347 GHCDPTCNLHDQFICFRGDVVEAIW 371


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 746,267
Number of extensions: 31859
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 293
Effective length of database: 726,862
Effective search space: 212970566
Effective search space used: 212970566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)