BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0940.p (488 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095838|ref|YP_001100913.1| succinate-semialdehyde dehydrog... 285 3e-78 gi|134096568|ref|YP_001101643.1| methylmalonate-semialdehyde deh... 194 9e-51 gi|134095327|ref|YP_001100402.1| multifunctional: transcriptiona... 137 1e-33 >gi|134095838|ref|YP_001100913.1| succinate-semialdehyde dehydrogenase I, NADP-dependent [Herminiimonas arsenicoxydans] Length = 492 Score = 285 bits (730), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 172/476 (36%), Positives = 264/476 (55%), Gaps = 27/476 (5%) Query: 21 YINGQWVPPQGNDRAAVVSPATEAAVCEIALGNAGDVDRAVQAARRALPDWAATSPWTRA 80 YI+G W N + +PA + + A + + A++AA+ A P WAA + RA Sbjct: 22 YIDGTWAGAATN--FDISNPADGSIIGSAPNMGAEETETAIRAAQSAFPAWAAKTGKERA 79 Query: 81 AFLGRVHALLLERSELFAQALTLEMGAPISYARTAHVP-------LAAEHLRVARDNLAD 133 + + L++ + A +T E G P+ +R + + E RV+ D +A Sbjct: 80 IIMRQWFDLIIANVDDLAILMTAEQGKPLIESRGEVIYGASFIEWFSEEAKRVSGDVMAS 139 Query: 134 YPFIRPRGTTAIVREPIGVCALITPWNWPIYQITAKVGPALAAGCTVVLKPSELSPLSAL 193 T +++PIG+CA ITPWN+PI IT KV PA+AAGCT+V+KP+E +PLSAL Sbjct: 140 ---TWNDKRTLTIKQPIGICAAITPWNFPIAMITRKVAPAVAAGCTIVIKPAEQTPLSAL 196 Query: 194 LFAEIVHDAGIPAGVFNLVNG---NGAEVGAAMSSHPQVDMVSITGSTRAGVLVAQAAAT 250 AE+ H AG+PAGV N++ N VG + + P V VS TGST G ++ + A Sbjct: 197 AIAELAHRAGLPAGVINVITADAENSIVVGKTLCASPIVRHVSFTGSTPVGRILMEQCAP 256 Query: 251 TVKRVAQELGGKSPNLVLPDADLARAIPPGVAAAFRNMGQSCSAPTRLIVPRAMLSQVHE 310 TVK++A ELGG +P +V DADL A+ + + +RN GQ+C R V + +++ Sbjct: 257 TVKKIALELGGHAPFIVFDDADLDAAVTGALQSKYRNAGQTCVCTNRFYVHES----IYD 312 Query: 311 LALQTL----AQMKVGDPSDAATTHGPLANRAQFLRVQQMIEVGMKDGARLLAGGPGRPQ 366 + +Q L A++KVG+ + GPL + +V+Q + +K GA ++ GG Sbjct: 313 VFVQKLAAGAARIKVGNGFEQGVLQGPLIDDQAIRKVEQHVSDAVKKGASVMTGGKKHAL 372 Query: 367 GLEQGYYARPTIFSDVHTDMAIAQEEIFGPVLAILPYDSVEEAITIANDTVYGLGAHVQG 426 G G++ PT+ S++ DM+I EE FGPV AI+ + + +EAI AN+T +GL ++ Sbjct: 373 G---GHFYEPTVLSNITDDMSIMHEETFGPVAAIVKFKTEDEAIAAANNTDFGLASYFYA 429 Query: 427 TDKDQVRAVAARIQSGQVHLNYPAWDPQ-APFGGYKQSGNGREYGVEGMEEYMEVK 481 D +V VA +++ G V +N + APFGG KQSG GRE G++EY+E+K Sbjct: 430 RDISRVWRVAEKLEYGMVGINTGLISNEVAPFGGVKQSGLGREGSKYGIDEYLEIK 485 >gi|134096568|ref|YP_001101643.1| methylmalonate-semialdehyde dehydrogenase, oxidoreductase protein [Herminiimonas arsenicoxydans] Length = 506 Score = 194 bits (493), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 155/491 (31%), Positives = 244/491 (49%), Gaps = 25/491 (5%) Query: 12 TATGRLDHFYINGQWVPPQGNDRAAVVSPATEAAVCEIALGNAGDVDRAVQAARRALPDW 71 +A ++H YING G + V +PAT + L + DV AV AA+ A P W Sbjct: 4 SAVSTIEH-YINGNLTNTVGGGQQPVFNPATGEISANVVLASDADVQTAVAAAKAAAPAW 62 Query: 72 AATSPWTRAAFLGRVHALLLERSELFAQALTLEMGAPISYARTAHVPLAAEHLRVARDNL 131 A +P RA L + L+ A A+T E G S A+ L V Sbjct: 63 AEMAPLKRARILFKFKDLIERHHNDLAAAITREHGKVFSDAKGE----VTRGLEVVEFAC 118 Query: 132 ADYPFIRPRGTTAI--------VREPIGVCALITPWNWPIYQITAKVGP-ALAAGCTVVL 182 ++ + + I +R+P+GV A ITP+N+P + + + P ALA G T +L Sbjct: 119 GVPQLLKTQFSDNIGGGIDNWNLRQPLGVTAGITPFNFP-FMVPMWMAPVALATGNTFIL 177 Query: 183 KPSELSPLSALLFAEIVHDAGIPAGVFNLVNGNGAEVGAAMSSHPQVDMVSITGSTRAGV 242 KPSE P +L+ AE++H AG+P GVFN++ G+ V + HP + VS GST Sbjct: 178 KPSERDPSPSLMVAELLHQAGLPDGVFNVLQGDKRAVDGLL-QHPDIKAVSFVGSTPIAE 236 Query: 243 LVAQAAAT---TVKRVAQELGGKSPNL-VLPDADLARAIPPGVAAAFRNMGQSCSAPTRL 298 + QA A + Q LGG +L V+PDA+L +A+ + AA+ + G+ C A + Sbjct: 237 YIYQAGAARKGSYPLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVA 296 Query: 299 IVPRAMLSQVHELALQTLAQMKVGDPSDAATTHGPLANRAQFLRVQQMIEVGMKDGARLL 358 + ++ ++ + + +KV + ++ GP+ + A +++ IE G+K GA+LL Sbjct: 297 VAVGSVADKLVAALIPRVKSLKVKNGMESDAEMGPVVSAAHKAKIEGYIEAGIKSGAKLL 356 Query: 359 AGGPGRP-QGLEQGYYARPTIFSDVHTDMAIAQEEIFGPVLAILPYDSVEEAITIANDTV 417 G G G G++ +F +V +M I QEEIFGPVL ++ A+ + N Sbjct: 357 VDGRGLTVDGHSNGFFLGGCLFDNVTPEMTIYQEEIFGPVLCVVRVPDFSAALDLINAHE 416 Query: 418 YGLGAHVQGTDKDQVRAVAARIQSGQVHLNYPAWDPQA--PFGGYKQS--GNGREYGVEG 473 +G G + +D + R + R++ G V +N P P A FGG+K+S G+ YG EG Sbjct: 417 FGNGVALFTSDGNTAREFSRRVEIGMVGINVPIPVPMAWHSFGGWKRSMFGDTHAYGEEG 476 Query: 474 MEEYMEVKSIL 484 ++ Y KSI+ Sbjct: 477 IKFYTRYKSIM 487 >gi|134095327|ref|YP_001100402.1| multifunctional: transcriptional repressor of proline utilization; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase [Herminiimonas arsenicoxydans] Length = 1224 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 131/465 (28%), Positives = 209/465 (44%), Gaps = 35/465 (7%) Query: 25 QW--VPPQGNDRAAVV----SPATEAAVCEIAL-GNAGDVDRAVQAARRALPDWAATSPW 77 QW P GN + V +PA + V A+ NA DV+RA+ A W T+P Sbjct: 564 QWHTQPLPGNASSTTVAIMRNPADHSDVLGTAVEANADDVERALALAIAGAEKWQKTAPS 623 Query: 78 TRAAFLGRVHALLLERSELFAQALTLEMGAPISYARTAHVPLAAEHLRVARDNLADYPFI 137 RA +LL +ELF Q + + A +P A LR D L Y Sbjct: 624 ERAG-------ILLNAAELFQQHAPEFIALSVREAGKT-LPNAIGELRETIDFLRYYS-- 673 Query: 138 RPRGTTAIVREPIGVCALITPWNWPIYQITAKVGPALAAGCTVVLKPSELSPLSALLFAE 197 + TTA + + +G+ A I+PWN+P+ T ++ ALAAG V+ KP+E +PL A + Sbjct: 674 -AQITTAQMEQALGLVACISPWNFPLSIFTGQLSAALAAGNAVLAKPAEQTPLIAFRAVQ 732 Query: 198 IVHDAGIPAGVFNLVNGNGAEVGAAMSSHPQVDMVSITGSTRAGVLVAQAAA--TTVKR- 254 ++H AG+P V + G G GA + + +V V TGST+ ++ + A + +R Sbjct: 733 LMHQAGVPEDVLLFLPGRGQTTGAQLVADARVSGVVFTGSTQVATIIHRTLAQRSMAERR 792 Query: 255 ---VAQELGGKSPNLVLPDADLARAIPPGVAAAFRNMGQSCSAPTRLIVPRAMLSQVHEL 311 + E GG++ +V A + + +A+AF + GQ CSA L + + + + Sbjct: 793 DIPLIAETGGQNAMIVDSSALCEQVVRDVIASAFDSAGQRCSALRVLCLQTDIAEKTLNM 852 Query: 312 ALQTLAQMKVGDPSDAATTHGPLANRAQFLRVQQMIEVGMKDGARLLAGGPGRPQGLEQG 371 +++ G P AT GP+ + ++ IE + + P QG Sbjct: 853 LHGAFEELQTGRPDQLATDVGPVIDAEAQQHLRAYIEQAGRRAKNM--KQLALPSTGTQG 910 Query: 372 YYARPTIFS-DVHTDMAIAQEEIFGPVLAILPY--DSVEEAITIANDTVYGLGAHVQGTD 428 + P I D +D+ Q E+FGPVL +L Y D + + + N T +GL V Sbjct: 911 TFVAPCIIEIDRMSDL---QREVFGPVLHVLRYRRDDLPQLVRDINATGFGLTLGVHSRI 967 Query: 429 KDQVRAVAARIQSGQVHLNYP---AWDPQAPFGGYKQSGNGREYG 470 + + + + G +++N A PFGG SG G + G Sbjct: 968 DETINYIVDHARVGNIYVNRNIIGAVVGVQPFGGEGLSGTGPKAG 1012 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.133 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 915,319 Number of extensions: 37863 Number of successful extensions: 143 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 3 Length of query: 488 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 403 Effective length of database: 720,272 Effective search space: 290269616 Effective search space used: 290269616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)