BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0938.p (311 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 179 1e-46 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 133 9e-33 gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 102 4e-23 gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herm... 77 1e-15 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 73 2e-14 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 179 bits (455), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 109/306 (35%), Positives = 166/306 (54%), Gaps = 13/306 (4%) Query: 1 MLQLDDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRIGVRVANRATRGIALTD 60 M + D+ L SLAAAA+ L +TPP+V+ RL IE R+ VR+ NR TR I+LT Sbjct: 1 MDGISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTP 60 Query: 61 EGQRLVQEAMDILERIESITARVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLVRDLH 120 EG+ + + ++ +E++ R+S GG + G L++ A FGFGRR++ P + Sbjct: 61 EGEIYLADGARLVAELEALEQRIS-----GGNVTAKGLLKISATFGFGRRHITPQLSAFA 115 Query: 121 RTHPNLVISLLLAESPLA-VATGADAVISIGQVKGSSWIGHFLAPNERFLCASPALARRM 179 R +P + + L L + P+ V G DA I GQ+ + +A N R +CASPA + Sbjct: 116 RLYPEVDVQLHLTDRPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKNH 175 Query: 180 SRLKHPSELTEYPYLCLRENDDDVSRLRFSPVDSTGRRQGKALTVRLSGALSSNDGTITR 239 P +L ++ + LRE+D+ FS +G +Q TV++ G+LS+NDG Sbjct: 176 GIPLTPRDLQKHNCILLRESDEIYGSWHFS----SGTKQE---TVKVRGSLSANDGECAT 228 Query: 240 DWALDGLGFVARSEWDCAHLVAEGSLKRVLPGWHLEPAPIMALLPSRQGLTTRQRVFLEA 299 WALDG G V RSEWD A + G L+ VL W L A I + P++ L+ + R ++ Sbjct: 229 AWALDGQGIVVRSEWDVAPYLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSAKTRALVDF 288 Query: 300 AKRAFQ 305 +AF+ Sbjct: 289 MLQAFE 294 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 133 bits (335), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 94/313 (30%), Positives = 155/313 (49%), Gaps = 17/313 (5%) Query: 4 LDDMQLLRALGSA---SSLAAAARLLDLTPPAVTVRLQRIEDRIGVRVANRATRGIALTD 60 +D ++ + A A SS AAAA L +TP V R+ +E R+GVR+ +R+TR +ALT+ Sbjct: 1 MDKLKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTE 60 Query: 61 EGQRLVQEAMDILERIESITARVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLVRDLH 120 EG ++ +L ++ + +S G VSG L + AP FGR++VAP ++ Sbjct: 61 EGSVYLEHCRKMLSELDQAESTLS-----AGHNKVSGHLIISAPASFGRQHVAPYAQNFL 115 Query: 121 RTHPNLVISLLLAESPLA-VATGADAVISIGQVKGSSWIGHFLAPNERFLCASPALARRM 179 HP L +S L + + V G D I IG +++ LA N+R +C +P ++ Sbjct: 116 EQHPGLKMSFNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAANKRVVCGTPDYFKKH 175 Query: 180 SRLKHPSELTEYPYLCLRENDDDVSRLRFSPVDSTGRRQGKALTVRLSGALSSNDGTITR 239 + K +L ++ L F+ +GK ++VR G+L NDG + Sbjct: 176 GKPKTLDDLAKHNCLAFNLQGGQQRGWYFN-------HRGKTVSVRAQGSLDCNDGELLH 228 Query: 240 DWALDGLGFVARSEWDCAHLVAEGSLKRVLPGWHLEPAPIMALLPSRQGLTTRQRVFLEA 299 W +GLG RS W+ + G+L+ VL + + IMA+ P ++ + + R+F+ Sbjct: 229 RWMSEGLGIAWRSVWEIQSQLESGTLETVLDDFAIPEYDIMAVYPQQRNVPAKVRLFISH 288 Query: 300 AKRAF-QPVPWRR 311 K + QP W R Sbjct: 289 LKTMYSQPGYWSR 301 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 102 bits (253), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/294 (28%), Positives = 140/294 (47%), Gaps = 16/294 (5%) Query: 7 MQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRIGVRVANRATRGIALTDEGQRLV 66 M+ A+ A S AA LD++ V+ + +ED +G R+ NR TR ++LT+ G Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 67 QEAMDILERIESITARVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLVRDLHRTHPNL 126 + + IL ++ +V+ +S A GTL+V P FG +APL+ + R +P + Sbjct: 61 ERCLQILADVDE-AEQVAAQS----AAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEV 115 Query: 127 VISLLLAESPL-AVATGADAVISIGQVKGSSWIGHFLAPNERFLCASPALARRMSRLKHP 185 + + LA+ + + G D I +G + S I LA + LCASPA + + P Sbjct: 116 RLDIALADRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQTP 175 Query: 186 SELTEYPYLCLRENDDDVSRLRFSPVDSTGRRQGKA-LTVRLSGALSSNDGTITRDWALD 244 +L ++ CL + S D +GK VR+ G + +N+G + R ALD Sbjct: 176 EDLKQHA--CLNYS-------YSSSGDEWVFGKGKTRAAVRVDGPMRANNGDMLRLAALD 226 Query: 245 GLGFVARSEWDCAHLVAEGSLKRVLPGWHLEPAPIMALLPSRQGLTTRQRVFLE 298 G G + + + A V G L ++ I A+ PSR+ L+ + R F++ Sbjct: 227 GAGLIWQPHFIVADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVD 280 >gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 76.6 bits (187), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/278 (25%), Positives = 131/278 (47%), Gaps = 18/278 (6%) Query: 3 QLDDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRIGVRVANRATRGIALTDEG 62 +++ +++ R +SS AA L +P VT +Q++E G + +R+TR + +T G Sbjct: 4 EMELLRIFRVAAESSSFRDAAVRLGTSPQGVTRAIQQLEQHYGEVLFHRSTRQVRITAFG 63 Query: 63 QRLVQEAMDILERIESITARVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLVRDLHRT 122 + L+ + LER E + + SD+ QAS+SGT+R+ AP G R V P + + Sbjct: 64 EGLLDQVRPALERFEDLWR--TPGSDQ--QASLSGTVRITAPHSLGTRAVLPALERVAAR 119 Query: 123 HPNLVISLLLAES-PLAVATGADAVISIGQVKGSSWIGHFLAPNERFLCASPALARRMSR 181 HP++ + + L++ V G D I +G ++ S ++ A + + A+P L +++ Sbjct: 120 HPDITLDVRLSDRISNTVDEGIDVGIRVGFMRDSRFVARKAADMKLPIVAAPRLIKKVGV 179 Query: 182 LKHPSELTEYPYLCLRENDDDVSRLRFSPVDSTGRRQGKALTVRLSGALSSNDGTITRDW 241 ++ L+ P D++ R P RQ + L +++ + Sbjct: 180 PENIDALSSLPATVAL----DINTGRPWPWHFKAGRQWTP----AAPTLVADNADMEMGA 231 Query: 242 ALDGLGFVARSEWDCAHLVAEGSLKRVL-----PGWHL 274 AL G+ F +++ A +A G L RVL P W L Sbjct: 232 ALAGIAFAQLADYMAAPYIASGKLVRVLESEEPPAWGL 269 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 132/296 (44%), Gaps = 16/296 (5%) Query: 5 DDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRIGVRVANRATRGIALTDEGQR 64 DD++ A+ + +L AAA+ L T AV+ L R+E+++ + R TR + LTDEG+ Sbjct: 6 DDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRL 65 Query: 65 LVQEAMDILERIESITARVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLVRDLHRTHP 124 +++A IL ++ + E+ R + SG LR+ A F + P V + +P Sbjct: 66 FLKKARAILAAMDE-----AEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYP 120 Query: 125 NLVISLLLAESPLAVATG-ADAVISIGQVKGSSWIGHFLAPNERFLCASPALARRMSRLK 183 + + L + + D I IG ++ S+ L N L ASP +R Sbjct: 121 QITLELTSNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPT 180 Query: 184 HPSELTEYPYLCLRENDDDVSRLRFSPVDSTGRRQGKALTVRLSGALSSNDGTITRDWAL 243 P +L + L + + + P+ G G+ LTV + AL ++ G R AL Sbjct: 181 TPEQLAGHQLLGFLQFESGNT----WPIRHAG---GEGLTV--TPALFASSGETLRALAL 231 Query: 244 DGLGFVARSEWDCAHLVAEGSLKRVLPGWHL-EPAPIMALLPSRQGLTTRQRVFLE 298 G G + +++ +A G L R+L ++ I A+ L+ R FLE Sbjct: 232 HGQGIASLADYMTRDDIAAGRLVRILENYYTGYRQQIHAVYYRNTQLSRRISCFLE 287 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 558,345 Number of extensions: 22841 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 6 Length of query: 311 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 229 Effective length of database: 730,157 Effective search space: 167205953 Effective search space used: 167205953 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)