BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0934.p
         (298 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096445|ref|YP_001101520.1| peptide ABC transporter [Hermin...    96   3e-21
gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter me...    64   7e-12

>gi|134096445|ref|YP_001101520.1| peptide ABC transporter
           [Herminiimonas arsenicoxydans]
          Length = 297

 Score = 95.5 bits (236), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 121/241 (50%), Gaps = 8/241 (3%)

Query: 59  SPYDATAI--VDTDVFTGM-----SHKFLLGTDYLGRDMLSRILFGTRATIGLALVSTVL 111
           +PYD T I  +D+ +  G      S  +LLGTD  GRDMLS IL+G R +I + + ST +
Sbjct: 47  NPYDLTQIDIMDSRLAPGAQNLDGSFTYLLGTDEQGRDMLSAILYGVRISIIVGVASTAI 106

Query: 112 ASLSGTAIALFAAFSGGWRDALISRALDALISIPSKMFALMMVATFGSSMGLLVLTAAIT 171
           A L G  + L A + GG  +  I R  D  +S P  + AL+++A  G  +  +V+     
Sbjct: 107 ALLIGLTLGLCAGYFGGRTEGFIMRVADIQLSFPPILVALILLALMGPGIDKIVIALIAV 166

Query: 172 YMPGAFRIARSLAVNVQAMEYVQAARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVV 231
                 R ARS A+  +  EY++AAR  G     I+   +LPN + P++    L+    +
Sbjct: 167 QWAYYARTARSAALVERKKEYMEAARGLGLSPLRIVFRHLLPNCLPPLIVIAALQVASAI 226

Query: 232 LLLSGLSFLSLGVQPPDADWGSLVRENISGLGEGALAV-IMPALAIASLTIGVNLLIDNL 290
            L + LSFL LG+   +   G L+      +  G   + + P +A+    + +NL+ D L
Sbjct: 227 SLEATLSFLGLGLPVTEPSLGLLIANGFDYMMSGKYWISVFPGIALLLTVVSINLVADQL 286

Query: 291 R 291
           R
Sbjct: 287 R 287


>gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 354

 Score = 64.3 bits (155), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 87/182 (47%)

Query: 81  LGTDYLGRDMLSRILFGTRATIGLALVSTVLASLSGTAIALFAAFSGGWRDALISRALDA 140
           LGTD  GRD+++R+L+G R ++   L  T    L G        +  G  D    R ++ 
Sbjct: 136 LGTDDRGRDVVARLLYGFRVSVLFGLALTFTGVLLGLLTGAIQGYFAGKTDLFFQRFMEI 195

Query: 141 LISIPSKMFALMMVATFGSSMGLLVLTAAITYMPGAFRIARSLAVNVQAMEYVQAARARG 200
             S+P     ++  + F  S+GLL++  ++    G     R+  +  + +EYVQAARA G
Sbjct: 196 WGSMPELYLLIIFASIFQPSIGLLLILLSLFGWMGLSDYVRADFLRNRNLEYVQAARALG 255

Query: 201 EGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSLVRENIS 260
                I+   +LPN + PV+     R    +L L+ L FL LGV    A  G L+ +  +
Sbjct: 256 LSNAQIIWRHILPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPASTASLGELLAQGKN 315

Query: 261 GL 262
            L
Sbjct: 316 NL 317


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 463,057
Number of extensions: 15946
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 217
Effective length of database: 733,452
Effective search space: 159159084
Effective search space used: 159159084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)