BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0932.p
         (540 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096447|ref|YP_001101522.1| putative dipeptide transport bi...    97   2e-21

>gi|134096447|ref|YP_001101522.1| putative dipeptide transport
           binding transmembrane protein [Herminiimonas
           arsenicoxydans]
          Length = 528

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 129/508 (25%), Positives = 201/508 (39%), Gaps = 84/508 (16%)

Query: 27  GFTRRDMMRTLLAGSLMTVGGTGLLTASGNAMAQTGKRGGKLRMATQTSSTSDTLDPAKT 86
           GF R  +    L G+L   G      AS  A A   K G         S+   +LDP   
Sbjct: 3   GFKREKLSALALMGALAWSGNL----ASHAAFAADLKIG--------LSADVSSLDPHYL 50

Query: 87  GHATDYARVNMFYNGLTKLD--GKLAPQMVLAEEMITTDAITWIVKLKKGVVFHDGKPLT 144
             A +    +  ++ L  +D  GKL P   LA      DA TW  KL++ V FHDG P T
Sbjct: 51  NIAPNVTFSSHIFDALVNVDANGKLVPG--LATSWRAVDATTWEFKLRRDVKFHDGSPFT 108

Query: 145 PADVVYSIMR------HKDPATASKVKVVADQFESVKATGPNEVQIKLTSANADLPVILS 198
             DV++S+ R         P TA   ++VA      K   P  V++   +    L + +S
Sbjct: 109 ADDVIFSLDRPAKLTSSPGPFTAYTKQIVAK-----KIVDPYTVRLMTAAPYGPLALDMS 163

Query: 199 TAQFLIVRDGTTNFSTAN--------GTGAFKLKEFTPGVRTIAVRNENYWKPGLPYLDE 250
           T  F++ +      ST +        GTG +K   F  G R    RN+ YW  G    D+
Sbjct: 164 TV-FIVSKKAAEKASTDDFNNGKALIGTGPYKFLSFKRGDRIEVTRNDQYWG-GKSDWDK 221

Query: 251 VELFGIPDEAARVNALLSGDVHWINDVNSRSTGRVKSTPGYTVMETKSGQYTDLVMRQDV 310
           V    I + A R+ ALLSGDV  I  V +    R+KS   ++  +  S  +  +    D 
Sbjct: 222 VTFRIITNSAPRLAALLSGDVDAIEGVPTADLSRLKSNAKFSFAQKIS--WRTIFWELDQ 279

Query: 311 APG------------------NNMDFTLGMKYLLDREQIKMAAFRGFAVIANDQPIDPTN 352
           +PG                  +++     M   ++R+ +      G AV A++  + P  
Sbjct: 280 SPGASRYVTDKSGKPLPNNPLHDVRVRQAMSKAINRQALVERTMEGLAVPASNI-VSPGI 338

Query: 353 RFYFAGLPQRPYDPDKAKFHLQKAGVLGSTIPIVASVAATGSVDMAV-------LMQQSA 405
             Y   L    YDP+ AK  L +AG      P   ++   G  D  +        + Q  
Sbjct: 339 FGYNDALKVEVYDPEGAKKLLAQAG-----YPHGFALTIHGPNDRYINDEQVVQTVAQFW 393

Query: 406 AKIGLKLDVKRVPPDGYWSN----QWMKVPVGFGNINPRPSADILLTQFFKSD------A 455
            +IG++  V  +P   Y++     ++    +G+G +    + D  L     +        
Sbjct: 394 NRIGIQTKVATLPLSVYFAKARAGEFSVSLLGWGTL----AGDFGLRTLVGTPNVETGWG 449

Query: 456 QWNESGWKNPQFDQLVVAARGETDFNKR 483
            WN   + NP  D+L+ ++    D  KR
Sbjct: 450 SWNWGKYSNPAVDKLIASSLSSVDQGKR 477


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,093,698
Number of extensions: 46788
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 454
Effective length of database: 716,977
Effective search space: 325507558
Effective search space used: 325507558
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)