BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0931.p
         (222 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093914|ref|YP_001098989.1| (S)-2-haloacid dehalogenase [He...    64   8e-12

>gi|134093914|ref|YP_001098989.1| (S)-2-haloacid dehalogenase
           [Herminiimonas arsenicoxydans]
          Length = 232

 Score = 63.5 bits (153), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 12/204 (5%)

Query: 9   ITFDCYGTLTRFQMSETA-QKIYADRISAEDMPFFLRQFAAYRLDEVLDQWKPYEQVCKN 67
           + FD YGTL   Q   TA ++ + +        +  +Q     L  ++D++  +E   ++
Sbjct: 7   VVFDLYGTLYDVQSVSTACEEAFPNMGDTIATLWRQKQLEYTWLRSLMDRYVNFENATED 66

Query: 68  AITRTCERWGIKTNDEETGAFYKAVPTWGPHADVPEGLSKVA-KEFPLVIFSNADDSQIM 126
           A+   C   G+K +     +   A     PH+D P+ L ++     PL I SN   + I 
Sbjct: 67  ALNYACGYLGLKLDATLHRSLSDAYLRLQPHSDTPDALRRLHDAALPLGIISNGSTASIS 126

Query: 127 HNVEK--LGAPFHKVFTAQQAQAYKPRLRAFEYMLDNLNCNPEDVLHVSSSLRYDLMPAS 184
             VE   LG  F ++ + +  Q +KP  + +      +    E++L VSS+  +D   A+
Sbjct: 127 QVVENSGLGWAFDQLISVESVQVFKPHSKVYALAETRMGLPRENILFVSSN-AWDATAAA 185

Query: 185 DMGI-------KNKVFVARGHEPS 201
             G        +N VF   G +P+
Sbjct: 186 HFGFPVCWVNRRNSVFDEMGAQPT 209


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 420,353
Number of extensions: 16381
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 144
Effective length of database: 743,337
Effective search space: 107040528
Effective search space used: 107040528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)