BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0929.p (308 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (... 71 6e-14 gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiim... 70 2e-13 gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehyd... 66 2e-12 gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminii... 63 2e-11 gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herm... 58 6e-10 >gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (glycolate reductase) [Herminiimonas arsenicoxydans] Length = 327 Score = 71.2 bits (173), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 57 PNLEILFSVGAGIDQFDMSILPPELPVVRMTEPGIVAGMVQYVTHAVLGLHR---EARLY 113 P L+ + +V G + D++ +V T + Y ++ R E+ Y Sbjct: 66 PQLKAICNVAVGYNNIDVAAATKAGIMVTNTPDVLNETTADYAWTLLMANARRTSESEHY 125 Query: 114 ARQQRQQVWQAHRVRPASA--CRVGVLGLGMLGRAVLQQLQGLGFPCAGWSRS--AHQLE 169 R + + W+ + A +G+LG+G +G+A+ ++ G +RS E Sbjct: 126 LRAGKWKNWRFDQFLGADVHGATLGILGMGRIGQAIARRSMGFDMQVIYHNRSRLTPDQE 185 Query: 170 GITCYSGSAGLRDFLARTDVLVCLLPLTDDTRGLLCRELFAQLPRGAALVNVGRGGHLVE 229 + + L D L+ +LP ++ T ++ A + A LVN+ RGG + + Sbjct: 186 AHANNARYVSKEELLRTADHLILVLPYSEQTHHIIGAAELALMKPTATLVNIARGGIVDD 245 Query: 230 DDLLAALQEGQLSAAVLDVCQTEPLPADHP-FWSHPDIVLTPHIASMTQ 277 L+AAL+E ++++A LDV + E PA HP F + ++VLTPHI S ++ Sbjct: 246 VALIAALREHRIASAGLDVYENE--PALHPDFLTLSNVVLTPHIGSASE 292 >gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiimonas arsenicoxydans] Length = 327 Score = 69.7 bits (169), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 1/139 (0%) Query: 135 VGVLGLGMLGRAVLQQLQGLGFPCAGWSRSAHQLEGI-TCYSGSAGLRDFLARTDVLVCL 193 +G+ G G +GR V Q G W R A + + Y ++ +F + DVL Sbjct: 153 LGIWGYGRIGRMVAGYGQAFGMKVLVWGRDASRAAAVQDGYQAASSREEFFSTADVLSLH 212 Query: 194 LPLTDDTRGLLCRELFAQLPRGAALVNVGRGGHLVEDDLLAALQEGQLSAAVLDVCQTEP 253 L L D TRG++ A + A VN R + D L AL++G+ A LDV ++EP Sbjct: 213 LRLNDATRGIVTASDLAHMKSSALFVNTSRAELVASDALQTALEQGRPGYAALDVFESEP 272 Query: 254 LPADHPFWSHPDIVLTPHI 272 L +++ +PH+ Sbjct: 273 LAPTSSLLRMENVLASPHL 291 >gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehydrogenase(partial) [Herminiimonas arsenicoxydans] Length = 317 Score = 65.9 bits (159), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 101/233 (43%), Gaps = 21/233 (9%) Query: 57 PNLEILFSVGAGIDQFDMSILPPE-LPVVRMTEPGIVAGMV-QYVTHAVLGLHREARLYA 114 P L ++ +G G+D D+ + V T G AG V +YV + L REA + Sbjct: 71 PKLRVVGRLGVGLDNIDVDACKARGIDVFPAT--GANAGAVAEYVIGTAMALLREAYTRS 128 Query: 115 RQQRQQVWQAHRVRPASACRVGVLGLGMLGRAVLQQLQGLGFPCAGWSRSAH-------- 166 + W R ++ + LG++G + QL G + AH Sbjct: 129 AETAAGTWP--RTALSNGREIAGKTLGLIGFGGIGQLTARLAQALGVTVIAHDPLLAPDA 186 Query: 167 ---QLEGITCYSGSAGLRDFLARTDVLVCLLPLTDDTRGLLCRELFAQLPRGAALVNVGR 223 Q G+ C L + L + D++ +PLT +TR L+ + A++ A L+N R Sbjct: 187 AIWQQAGVACKQ----LHEVLEQADIVSLHIPLTTNTRNLIGADALARMKPDAVLINTSR 242 Query: 224 GGHLVEDDLLAALQEGQLSAAVLDVCQTEPLPADHPFWSHPDIVLTPHIASMT 276 G + E L AL L A +DV EPL + + P ++LTPHIA +T Sbjct: 243 GEIVDEAALAQALHSANLGGAAIDVFAQEPLAPGNALANAPRVILTPHIAGVT 295 >gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminiimonas arsenicoxydans] Length = 400 Score = 62.8 bits (151), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 29/249 (11%) Query: 45 AWTPPEDIAQRFPNLEILFSVGAGIDQFDMSILPPELPVVRMTEPGIVAGMVQYVT---- 100 A+ E IA + L+++ + G G D D+ + I V Y Sbjct: 102 AYMTAERIA-KAKKLKMIVTAGIGSDHTDLEA---------ANKHNITVAEVTYCNSHSV 151 Query: 101 --HAVLGLHREARLYARQQRQQV---WQ----AHRVRPASACRVGVLGLGMLGRAVLQQL 151 H ++ + + R Y +Q + W R A VG + G +G VL+ L Sbjct: 152 AEHVLMMILSQVRNYIPSYKQVIDGGWNIADCVSRSYDLEAMSVGTVAAGRIGLRVLRLL 211 Query: 152 QGLGFPCAGWSR----SAHQLEGITCYSGSAGLRDFLARTDVLVCLLPLTDDTRGLLCRE 207 R +A + E Y + L DV+ PL +T ++ + Sbjct: 212 HPFDVKLHYMDRHRLPTAVEKELNLTYHST--LESLTKVCDVVTLNCPLHPETEHMINEK 269 Query: 208 LFAQLPRGAALVNVGRGGHLVEDDLLAALQEGQLSAAVLDVCQTEPLPADHPFWSHPDIV 267 RGA ++N RG D ++AAL+ GQL+ DV +P P +HP+ + P Sbjct: 270 TLKNFKRGAYIINTARGKLCDRDAIVAALKSGQLAGYAGDVWFPQPAPKNHPWRTMPHHG 329 Query: 268 LTPHIASMT 276 +TPHI+ + Sbjct: 330 MTPHISGTS 338 >gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herminiimonas arsenicoxydans] Length = 336 Score = 58.2 bits (139), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 99/235 (42%), Gaps = 26/235 (11%) Query: 49 PEDIAQRF----PNLEILFSVGAGIDQFDMSILPPELPVVRMTEPGIVAGMVQYVTHAVL 104 P+ + F P L+I+F+ G D FD+ R GIV ++ T + Sbjct: 54 PDSVDDSFLAACPKLKIVFAALKGYDNFDVDACTK-----RGVWFGIVPDLLTVPTAELT 108 Query: 105 GLHREA---RLYARQQRQQVWQAHRVRPA------SACRVGVLGLGMLGRAVLQQLQGLG 155 + A + H RP + +G++G+G +G+A+ ++L G Sbjct: 109 VGLLLGLTRHVMAGDDHVRSGTFHGWRPKLYGAGLAGSTIGIIGMGRVGKAIAKRLSGFE 168 Query: 156 FPCAGW-SRSAHQLEGITCYSGSAGLRDFLARTDVLVCLLPLTDDTRGLLCRELFAQLPR 214 S + ++ + + L +D +V +LP+T DT L+ +++ R Sbjct: 169 MNAVYCDSVPLNPVDEQAWNARQVSFDELLTCSDFVVPMLPMTSDTFHLIDAHAISKMRR 228 Query: 215 GAALVNVGRGGHLVEDDLLAALQEGQLSAAVLDVCQTEPLPADHPFWSHPDIVLT 269 G+ L+N RG + E+ ++ AL +G L+ DV + E W+ PD LT Sbjct: 229 GSYLLNTSRGSVVDENAVVEALNQGHLAGYAADVFEMEE-------WARPDRPLT 276 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.140 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 636,039 Number of extensions: 26725 Number of successful extensions: 70 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 68 Number of HSP's successfully gapped: 5 Length of query: 308 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 227 Effective length of database: 733,452 Effective search space: 166493604 Effective search space used: 166493604 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)