BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0924.p
         (164 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory p...    80   4e-17
gi|134096351|ref|YP_001101426.1| high-affinity branched-chain am...    75   2e-15
gi|134093985|ref|YP_001099060.1| putative transcriptional regula...    73   7e-15

>gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory
           protein [Herminiimonas arsenicoxydans]
          Length = 155

 Score = 80.5 bits (197), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 2/151 (1%)

Query: 8   KLDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGAYIRLEKL 67
           K DR D  +L  LQ   R++NV L++ V LSP  C  RV+RLE+ G I GY A +    L
Sbjct: 3   KFDRYDRILLETLQSKGRVSNVELSERVNLSPPQCYRRVQRLEQEGVIRGYAALVDAAAL 62

Query: 68  ADVQIVFTEVTLSDHRREDFAKFESYIRNVDEIIECHLVSGGYDYLLKFMTRSVVHYQSV 127
                 F  + ++  + +   + E  IR   EI+EC+ +SG +DYLLK +   +    S 
Sbjct: 63  GLGVTAFVNLNIAREQFKQVRELEQAIRQFPEILECYTISGDFDYLLKVVATDLKSLSSF 122

Query: 128 IESLLEQNLRIEKYFSYIVIKSPFVKHHYPL 158
           +   L Q   +    S + ++   +K   PL
Sbjct: 123 LTDRLMQVPGVAGVRSMVCLEE--IKPASPL 151


>gi|134096351|ref|YP_001101426.1| high-affinity branched-chain amino
           acid transport system; global regulatory protein, Leu
           responsive; site-specific blocking of 549 methylation
           [Herminiimonas arsenicoxydans]
          Length = 157

 Score = 75.1 bits (183), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 72/146 (49%)

Query: 2   MTNGALKLDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGAY 61
           M++  + LD +D RIL  LQ +S  TN  LA AV  SP  CL RVKRL  AG I    A 
Sbjct: 1   MSDDTILLDELDRRILNALQGDSSQTNNDLALAVHASPPTCLRRVKRLVDAGVIERQVAI 60

Query: 62  IRLEKLADVQIVFTEVTLSDHRREDFAKFESYIRNVDEIIECHLVSGGYDYLLKFMTRSV 121
           +  +K+        E+TL +   E   +FE+ +     +++C+ VS G D++L      +
Sbjct: 61  VSPQKIGAGLTAIVEITLDNQAAERQVEFETVVAGESAVLQCYRVSPGPDFVLVIQVADM 120

Query: 122 VHYQSVIESLLEQNLRIEKYFSYIVI 147
             Y +++  L   +  +    S+  I
Sbjct: 121 PAYNALVHRLFASHANVRNVKSFFSI 146


>gi|134093985|ref|YP_001099060.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 169

 Score = 73.2 bits (178), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 62/106 (58%)

Query: 9   LDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGAYIRLEKLA 68
           LD++D ++L  LQ++++I   ILAD V +S   CL R++ +  AG IS   A I    L 
Sbjct: 7   LDKVDRKLLNLLQKDNQIPTRILADKVHISQPTCLRRIRDMRDAGIISADVAMIDPFALG 66

Query: 69  DVQIVFTEVTLSDHRREDFAKFESYIRNVDEIIECHLVSGGYDYLL 114
              + F EV+L++   E   +FE+ +    E+++C+ VSG YDY L
Sbjct: 67  YGMLAFLEVSLANQSDEHMLEFETRMNREPEVMQCYFVSGDYDYFL 112


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.141    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 280,630
Number of extensions: 9913
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 3
Length of query: 164
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 89
Effective length of database: 753,222
Effective search space: 67036758
Effective search space used: 67036758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)