BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0923.p
         (676 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095068|ref|YP_001100143.1| putative flagellar hook-associa...    65   2e-11

>gi|134095068|ref|YP_001100143.1| putative flagellar hook-associated
           protein 2 (filament CAP protein) [Herminiimonas
           arsenicoxydans]
          Length = 662

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 55/83 (66%)

Query: 588 SGGVVPKLQKLMDSILGDNGTLATKTKGLQDSLKVVTDQQTAANTRLQNLKDAYTNQFNR 647
           S G    LQ L+ + LG +G +A +T G+ +++K + +Q+TA NTRL +++  Y  Q++ 
Sbjct: 576 SRGYATNLQGLLGNYLGSSGMIAGRTDGINENIKQLNNQRTAINTRLIDIEARYRKQYSS 635

Query: 648 LNVTLATMQSRQSYLTEQLAKLA 670
           L+V L+ M +  +YLT+QLA L+
Sbjct: 636 LDVLLSNMGATSNYLTQQLAALS 658


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.306    0.120    0.314 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,085,414
Number of extensions: 42802
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 588
Effective length of database: 710,387
Effective search space: 417707556
Effective search space used: 417707556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 132 (55.5 bits)