BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0921.p
         (215 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096204|ref|YP_001101279.1| putative stringent starvation p...    64   9e-12

>gi|134096204|ref|YP_001101279.1| putative stringent starvation
           protein A [Herminiimonas arsenicoxydans]
          Length = 203

 Score = 63.5 bits (153), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 18/187 (9%)

Query: 1   MTTLYSYFRSSASYRVRIALNLKGVAYETAAVHLLNQGGEQLLPAFTQVNPHALVPVLAD 60
           M  LYS      S R R+ L  KG+ +E   V L N+  +      + +NP+  VP+L +
Sbjct: 1   MMVLYSGTTCPFSQRCRLVLFEKGMDFEVRDVDLFNKPED-----ISTMNPYGQVPILVE 55

Query: 61  QGRLLTQSMAMLEYLEERYPTPALLPGDAFQRAHIRELALAIACE--IHPLNNLRVLRYL 118
           +  +L +S  + EY++ER+P P L+P D   RA  R +      E  IH           
Sbjct: 56  RDLILYESNIINEYIDERFPHPQLMPADPLMRARARLMLFNFEKELFIH----------- 104

Query: 119 KHQLAVDEAQKTAWIQHWIKLGFSALEQQLAADTTRGHFCVGDAPTMADCFLVPQIFNAR 178
            H L  D+ +     Q   +         LA    +  + +GD  +M D  + P ++   
Sbjct: 105 VHVLENDKGRSGEKAQEKARNEIRDRLTTLAPLFLKNKYMLGDEFSMLDVAIAPLLWRLD 164

Query: 179 RFEVDMA 185
            + ++++
Sbjct: 165 HYGIELS 171


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 388,551
Number of extensions: 15295
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 137
Effective length of database: 743,337
Effective search space: 101837169
Effective search space used: 101837169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)