BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0917.p
         (304 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096571|ref|YP_001101646.1| LysR family transcriptional reg...   144   7e-36
gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-...    56   2e-09

>gi|134096571|ref|YP_001101646.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 319

 Score =  144 bits (362), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 97/298 (32%), Positives = 143/298 (47%), Gaps = 13/298 (4%)

Query: 9   IDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTAQGMQPTPF 68
           +DLNLL VF  V  E+ ++  A  L ++QPAVSNAL RLR + GDEL +RTA G++PT  
Sbjct: 6   LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDALGDELVIRTAHGVKPTSR 65

Query: 69  AEHLAEPVAAALQQVARALNLQEGFAPQDSERRFTIAMTDVGEVYFMPRLIEACACVAPG 128
           A  L   V  AL  +  A+   + F    +   F +AM D     ++P L+ A    APG
Sbjct: 66  ATELWPVVRRALSDLETAVT-PDTFDVSRATTTFRMAMADATAALWLPFLVRAIEKEAPG 124

Query: 129 VRLSTVRAGNIDLKSEMEAGRVDLAIGAFDNLSEALY-----------QRRLFRQEYVSM 177
           + +  V     + +  +  G +DLAIG F  ++  L              RL+  EYV +
Sbjct: 125 LNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGEYVCV 184

Query: 178 FRLGHALDKRGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVP 237
            R  H L K  E++L  + AA HL+VS        ++  L + G    +   V  F    
Sbjct: 185 MRKNHPLAKE-ELTLDTYCAAHHLLVSFSGRAKGLMDDALSEVGRERRILLTVNQFFTAG 243

Query: 238 YIVSSTALVVTVPRKLAESAAAPFGLRYIKPPLRLPALQTNMFWHRRYNQDEGNVWLR 295
            +V+S+ L+  +PR L  S      L     P  LP +  +M WH R  ++  + WLR
Sbjct: 244 RVVASSDLITVLPRHLIASTGMEEALIAKDLPFSLPEVHVDMLWHERDARNPAHKWLR 301


>gi|134095567|ref|YP_001100642.1| transcriptional regulator
           CysB-like protein [Herminiimonas arsenicoxydans]
          Length = 313

 Score = 55.8 bits (133), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 17/220 (7%)

Query: 16  VFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTAQGMQPTPFAEHLAEP 75
           V + V Q   ++  A+ L  SQP VS A+  L    G ++F R  + ++       L EP
Sbjct: 9   VREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRG------LTEP 62

Query: 76  VAAALQQVARALNLQEG-------FAPQDSERRFTIAMTDVGEVYFMPRLIEACACVAPG 128
             A L+ V   +   EG       FA  DS   FTIA T     Y +P++++A     P 
Sbjct: 63  GRAVLKSVEAIMLEIEGLKRIGNEFAAHDS-GSFTIATTHTQARYSLPKVVQAFTQKFPK 121

Query: 129 VRLSTVRAGNIDLKSEMEAGRVDLAIG--AFDNLSEALYQRRLFRQEYVSMFRLGHALDK 186
           VRLS ++     +   +   + DLAI   A  N+ + L     ++ E+  +  L H L K
Sbjct: 122 VRLSLLQGNPKQIAEMVLMDQADLAIATEAIANM-DGLISLPCYQWEHQIVLPLDHPLLK 180

Query: 187 RGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSV 226
              ++L+E  A   +   S  +  ++I+       + P +
Sbjct: 181 SKSITLEELAAYPIITYDSAFAGRNKIDHAFNLRNLKPDI 220


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 512,419
Number of extensions: 18001
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 3
Length of query: 304
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 223
Effective length of database: 733,452
Effective search space: 163559796
Effective search space used: 163559796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)