BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0915.p
         (851 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096545|ref|YP_001101620.1| oxidoreductase binding flavins ...   351   1e-97

>gi|134096545|ref|YP_001101620.1| oxidoreductase binding flavins
           likely to be involved in sulfur metabolism (CysJ:
           sulfite reductase subunit alpha) [Herminiimonas
           arsenicoxydans]
          Length = 456

 Score =  351 bits (900), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 219/518 (42%), Positives = 286/518 (55%), Gaps = 80/518 (15%)

Query: 340 IIMAIASLMMPLFGITGWMLYLDRRRKKAALRAERESLGEAPRNAAD----STQGDPVLV 395
           I++ +  L M +F      +Y  +RRK+           +A RNAA     +    P L+
Sbjct: 13  ILLVVIYLAMCIF------IYCVQRRKQQ----------QAIRNAAALVPAAKGAKPWLI 56

Query: 396 VHASQTGQAERIALHTAAGLRRSGLSVSLQALAQTTLESLRHHRRILFIASTFGDGDAPD 455
            +ASQTG AE +A +TA  L  +G+   + +L+ T+ + L    R LFI ST+G+GD PD
Sbjct: 57  SYASQTGFAEELAWNTARLLHTAGVPTRVASLSDTSADDLMQAERALFIVSTYGEGDPPD 116

Query: 456 SARGFEKRLRQAAGQSLSHVQYAILALGDRHYTQFCGFGHTLDHGLRQCGATPLFPLVEV 515
           +A  F  +L      +L H+ + +L LGD  YT FCGFG TL   L+  GA  LF  V V
Sbjct: 117 NASLFASKLMHTE-PALPHLHFGMLMLGDSAYTHFCGFGRTLTAWLQARGAHALFDSVAV 175

Query: 516 DRMAASALRKWDSELAAHGLQAGVAELLPTSAPTWQSWTLRRRVLMNPGSQGEPLYHLEL 575
           D   A AL  W   L+     AG ++     AP +Q W L  R  +NPGS G P +H+EL
Sbjct: 176 DNADAKALHDWQHHLSH---IAGTSDAPDWQAPAYQQWRLAARRHLNPGSAGNPTFHIEL 232

Query: 576 QPQSGPLPAWQAGALVQVQPRHAPDRIALLLQRLQLDGATRVRHQGAECTLAEALAGSIL 635
           Q  +     W+AG L+QV+                                         
Sbjct: 233 QAPN-EQATWEAGDLLQVR----------------------------------------- 250

Query: 636 PPHPANDAQALADQLQPLAARSYSVASVPQDGALHLLVRQVQHEDG-LGLASGWLTEYAP 694
                    A ADQ +   AR YSVAS+P DG +HLLVRQ +HEDG LG+ASGWLTE + 
Sbjct: 251 ---------APADQQR---AREYSVASIPSDGRVHLLVRQERHEDGSLGIASGWLTEQSA 298

Query: 695 LEGALPLRLLDNAGFAPLDT-DAPAIFIGNGSGLAGLRSHLRARVQAGQKRNWLLFGERN 753
           L   + +RL  ++ F   D    P +FIGNG+GLAGLRSHL+AR   G++RNWLLFGERN
Sbjct: 299 LGTMIDVRLRAHSNFRLGDNLHRPLVFIGNGTGLAGLRSHLKARAANGRQRNWLLFGERN 358

Query: 754 ERYDFLYREELLQWLEQGQLARLDLAFSRDQAERLYVQDRLREAAPELRQWIAQGAVLYV 813
             +DF YR+E+  W  QG L R+D+ FSRDQAER+YVQD+LRE A  +R W+A  A +YV
Sbjct: 359 AAHDFYYRDEIEAWQAQGILERVDIVFSRDQAERMYVQDKLREQADVMRAWLAADAAIYV 418

Query: 814 CGSLEGMAAGVDAVLNATLGEQTVHALIEQNRYRRDVY 851
           CGSLEGMA GV+A L   +G   V  LI Q RYRRDVY
Sbjct: 419 CGSLEGMAGGVEAALTDIMGAAAVEQLISQGRYRRDVY 456


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,634,473
Number of extensions: 67289
Number of successful extensions: 207
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 3
Length of query: 851
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 761
Effective length of database: 703,797
Effective search space: 535589517
Effective search space used: 535589517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)