BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0912.p
         (104 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093983|ref|YP_001099058.1| putative cytochrome c [Herminii...   126   2e-31
gi|134093740|ref|YP_001098815.1| cytochrome c-552 [Herminiimonas...    82   4e-18
gi|134094418|ref|YP_001099493.1| cytochrome c [Herminiimonas ars...    78   1e-16

>gi|134093983|ref|YP_001099058.1| putative cytochrome c
           [Herminiimonas arsenicoxydans]
          Length = 102

 Score =  126 bits (317), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 80/104 (76%), Gaps = 2/104 (1%)

Query: 1   MKYLLLIATLVAGSAMSAQAMANEQLAKSKNCMACHSVDAKIVGPAYKEVAKKYAGQKDA 60
           MK  LL+  LV  + +S  A+AN  LAK+KNCMACHSV  K++GP++K+V  KYAGQK A
Sbjct: 1   MKSSLLVG-LVLAAGVSNVALANADLAKAKNCMACHSVTNKVLGPSFKDVGAKYAGQKGA 59

Query: 61  EAKLVKKVLDGGSGVWGPVAMPANKGQVTEAEAHQLVKWILSLK 104
           E KLV+K++ GGSG WG V MPAN  QV++AEAH LVKWILSLK
Sbjct: 60  EDKLVQKIIKGGSGTWGTVPMPAN-AQVSDAEAHTLVKWILSLK 102


>gi|134093740|ref|YP_001098815.1| cytochrome c-552 [Herminiimonas
           arsenicoxydans]
          Length = 105

 Score = 82.4 bits (202), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 2/71 (2%)

Query: 32  CMACHSVDAKIVGPAYKEVAKKYAGQKDAEAKLVKKVLDGGSGVWGPVAMPANKGQVTEA 91
           CMACH  + KIVGP + E+A KY G K A + LVKK+  GGSGVWG   MP N   ++EA
Sbjct: 34  CMACHGTNNKIVGPGFNEIANKYKGNKTAVSTLVKKIKVGGSGVWGTTPMPPN--NLSEA 91

Query: 92  EAHQLVKWILS 102
           +A  +V+WIL+
Sbjct: 92  DAKLVVEWILA 102


>gi|134094418|ref|YP_001099493.1| cytochrome c [Herminiimonas
           arsenicoxydans]
          Length = 359

 Score = 77.8 bits (190), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 26  LAKSKNCMACHSVDAKIVGPAYKEVAKKYAGQKDAEAKLVKKVLDGGSGVWGPVAMPANK 85
           LAK   C+ACH V  KIVGP + E+A KY G   A   L  KV +G SG WGPV MP  +
Sbjct: 281 LAKQYACIACHGVSNKIVGPGFNEIAAKYKGDSAAATTLFDKVKNGSSGAWGPVPMPG-Q 339

Query: 86  GQVTEAEAHQLVKWILS 102
             V + +   LV WILS
Sbjct: 340 AHVKDEDVKTLVSWILS 356


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.126    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 177,114
Number of extensions: 5637
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 3
Length of query: 104
Length of database: 1,000,347
Length adjustment: 69
Effective length of query: 35
Effective length of database: 772,992
Effective search space: 27054720
Effective search space used: 27054720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 122 (51.6 bits)