BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0911.p (300 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 431 e-122 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 135 2e-33 gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [... 83 2e-17 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 81 5e-17 gi|134095322|ref|YP_001100397.1| methionine biosynthesis [Hermin... 73 2e-14 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 431 bits (1109), Expect = e-122, Method: Compositional matrix adjust. Identities = 216/293 (73%), Positives = 247/293 (84%), Gaps = 2/293 (0%) Query: 6 RLELRQLRYFAAVAEEKHFGRAAARLHMTQPPLSQTIAALEEQLGTPLFQRTKRSVALTP 65 +ELRQLRYF VAEE HFGRAA RLHMTQPPLSQ I +LE LG LF+RT RSVALTP Sbjct: 2 NIELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTP 61 Query: 66 AGAALLPEVQRILQQAAALPDLARRAASGASGLLSLSFISSADYSILPPLLQRFRARYPQ 125 AG+ALLPE QRILQQ AALPDL RR SGASG LSL+F+S+ADYS+LPP L+ FR YP Sbjct: 62 AGSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPG 121 Query: 126 VQIELREATTDIQLDDLIQGKIDAGLLLPPLPEKAAALLDVRPVLSEPLIAALPEG--AV 183 V+I+LREATTD+QLDDL+QG+ID GLL+PPLP+KA LD PVLSEPLI A P+G A+ Sbjct: 122 VEIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLKAL 181 Query: 184 KRRGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIDQEAIQMQTIVGLVSA 243 K + V+L+SL ELPLIIFPRRIAPAFHD ILSC+RDAG+TPHI QEAIQMQTI+GLVSA Sbjct: 182 KGKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAGLTPHIGQEAIQMQTIIGLVSA 241 Query: 244 GMGMALVPQSVSNLKRPGVDYRRLSDTAPSIQTGLAWRRDNPSGVLRALLELL 296 GMG+ALVPQSVSNLKRPGVDY+ L++ P ++TGLAWRRDN S VL+A LELL Sbjct: 242 GMGIALVPQSVSNLKRPGVDYKPLANKTPLVETGLAWRRDNASPVLKAFLELL 294 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 135 bits (340), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 15/292 (5%) Query: 7 LELRQLRYFAAVAEEKHFGRAAARLHMTQPPLSQTIAALEEQLGTPLFQRTKRSVALTPA 66 + L +L+Y AVA EKHFG AA H+ QP LS I LE++LG LF+R +++TP Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 67 GAALLPEVQRILQQAAALPDLARRAASGASGLLSLSFISSADYSILPPLLQRFRARYPQV 126 G ++ + +R+L+Q AA+ ++A++ G L I + +LPPL++ R PQ+ Sbjct: 61 GVQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQM 120 Query: 127 QIELREATTDIQLDDLIQGKIDAGLLLPPLPEKAAALLDVRPVLSEPLIAALPEGA-VKR 185 + L+E T L+ L QG+IDA ++ P+P++ L V+PV EP + A+P+ Sbjct: 121 PLVLQENFTVKLLEQLRQGEIDAAIVALPIPDQG---LLVQPVYDEPFVVAVPKHHPWAE 177 Query: 186 RGPVSLKSLRELPLIIFPRRIAPAFHDTIL------SCFRDAGVTPHIDQEAIQMQTIVG 239 R V+ +L+ +++ F D +L S F +G E ++TI Sbjct: 178 RSSVTTDNLKSETMLLLGN--GHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRH 235 Query: 240 LVSAGMGMALVPQ-SVSNLKRPG--VDYRRLSDTAPSIQTGLAWRRDNPSGV 288 +V++G+G+ ++PQ SV ++ + Y PS + L WR+ GV Sbjct: 236 MVASGIGITVLPQASVPDMHTTDGMLRYIPFVQPGPSRRVVLVWRKSFTRGV 287 >gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [Herminiimonas arsenicoxydans] Length = 308 Score = 82.8 bits (203), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 6/222 (2%) Query: 31 LHMTQPPLSQTIAALEEQLGTPLFQRT-KRSVALTPAGAALLPEVQRILQQAAALPDLAR 89 L +QP +S+ I LEE+LG +F+R KR LT G +L + R+L +A L ++ Sbjct: 26 LFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLTDPGRGILTIIDRLLLEAENLQRASQ 85 Query: 90 RAASGASGLLSLSFISSADYSILPPLLQRFRARYPQVQIELREATTDIQLDDLIQGKIDA 149 A G L+++ + +LP ++Q FRA +P+V+I L++++ + + ++ GK D Sbjct: 86 EYAGQEIGTLAVATTHTQARYMLPEVVQAFRAEFPKVRIALQQSSPEHIAEWVLSGKADI 145 Query: 150 GLLLPPLPEKAAALLDVRPVLSEPLIAALPEG-AVKRRGPVSLKSLRELPLIIFPRRIAP 208 G+ L + L P +P+G A+ PV+L++L + PLI + Sbjct: 146 GIATEGLSQFED--LVSFPCYRWHHAIVVPQGHALLSHAPVTLEALAKYPLITYDLGFTG 203 Query: 209 AFHDTILSCFRDAGVTPHIDQEAIQMQTIVGLVSAGMGMALV 250 H I F+ A + P I A+ I VS G+G+ +V Sbjct: 204 RGH--IDDAFKSADIAPDIVLTAMDSDVIQQYVSLGLGVGIV 243 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 81.3 bits (199), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 111/248 (44%), Gaps = 17/248 (6%) Query: 9 LRQLRYFAAVAEEKHFGRAAARLHMTQPPLSQTIAALEEQLGTPLFQRTKRSVALTPAGA 68 LRQL+ F VA F RAA LH+TQP +S + LE+ G LF++ + + LTP G Sbjct: 50 LRQLKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGT 109 Query: 69 ALLPEVQRILQQAAALPDLARRAASGASGLLSLSFISSADYSILPPLLQRFRARYPQVQI 128 LL + I+QQ D + G L+++ IS+ DY P LL F + V + Sbjct: 110 ELLHYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVISAGDY-FFPRLLVEFARSHQGVTL 168 Query: 129 ELREATTDIQLDDLIQGKIDAGLLLPPLPEKAAALLDVRPVLSEP-LIAALPEGAVKRRG 187 L + L+ L D +++ P P + + P P +I A P+ + + Sbjct: 169 NLSVHNREGLLNQLANNLTDLAIMVRP-PTDMDTINE--PFAPHPYVIVAAPDHHLVSKK 225 Query: 188 PVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIDQEAIQM-----QTIVGLVS 242 + + +L P ++ + DT S + G ID I M +TI V Sbjct: 226 NIPMSTLIHEPFVVREKG-----SDTWHSM--EDGFGSRIDDLNIAMEIKSTETIKQAVI 278 Query: 243 AGMGMALV 250 AGMG++ + Sbjct: 279 AGMGISFL 286 >gi|134095322|ref|YP_001100397.1| methionine biosynthesis [Herminiimonas arsenicoxydans] Length = 306 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 65/124 (52%) Query: 7 LELRQLRYFAAVAEEKHFGRAAARLHMTQPPLSQTIAALEEQLGTPLFQRTKRSVALTPA 66 LELR L+ A+ E + RAA+ L++TQ LS + LE+ GT LF+R V TPA Sbjct: 5 LELRHLKTLIALREAGNLLRAASLLNVTQSALSHQLKQLEDHHGTQLFERKSVPVRFTPA 64 Query: 67 GAALLPEVQRILQQAAALPDLARRAASGASGLLSLSFISSADYSILPPLLQRFRARYPQV 126 G LL +L Q A R A G +G L ++ + L P + FR R+P+V Sbjct: 65 GERLLKLADTVLPQVAETERDLVRLAQGVAGQLRIAVECHTCFDWLMPAMDVFRGRWPEV 124 Query: 127 QIEL 130 ++++ Sbjct: 125 ELDI 128 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 495,638 Number of extensions: 18281 Number of successful extensions: 101 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 21 Length of query: 300 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 219 Effective length of database: 733,452 Effective search space: 160625988 Effective search space used: 160625988 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)