BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0906.p
         (209 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094318|ref|YP_001099393.1| 4-hydroxy-2-oxoglutarate aldola...   308   2e-85

>gi|134094318|ref|YP_001099393.1| 4-hydroxy-2-oxoglutarate aldolase
           / 2-dehydro-3-deoxyphosphogluconate aldolase
           [Herminiimonas arsenicoxydans]
          Length = 192

 Score =  308 bits (788), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 152/192 (79%), Positives = 170/192 (88%)

Query: 16  VIAIDKFEHAVPLARALVAGGIRVLEVTLRTEHGLPAIRAIAEQVPEAIVGVGTLTAPEE 75
           +IAID   HAVPLARALVAGGIRVLEVTLRT++GL AIR IAEQVPEAI+GVGTLT  E+
Sbjct: 1   MIAIDDLSHAVPLARALVAGGIRVLEVTLRTQYGLAAIREIAEQVPEAILGVGTLTRHED 60

Query: 76  FTASRDAGAVFGVSPGLTPALIEAAKRSGLPLLPGVMTPSEVMAAREAGFRQLKLFPAVP 135
           F A+RDAGA+FGVSPGLT  LIE A+ SGLPLLPGVMTPSEVM AREAGFRQ+KLFPAVP
Sbjct: 61  FAAARDAGAIFGVSPGLTKELIEGARSSGLPLLPGVMTPSEVMRAREAGFRQVKLFPAVP 120

Query: 136 AGGIGMLNGIAGPLADVSFCPTGGITQETAPQFLACKNVVCVGGSWLTPKAAIEAGDWDK 195
           AGG+GMLN IAGPL D+ FCPTGGI+QETA QFLACKNV CVGGSWLTPK A+ AGDW +
Sbjct: 121 AGGVGMLNAIAGPLPDMLFCPTGGISQETAAQFLACKNVACVGGSWLTPKDALAAGDWAR 180

Query: 196 ITEIAKAAAALK 207
           +T +AKAA+AL+
Sbjct: 181 VTALAKAASALR 192


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 436,720
Number of extensions: 19040
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 131
Effective length of database: 743,337
Effective search space: 97377147
Effective search space used: 97377147
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)