BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0905.p (623 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094317|ref|YP_001099392.1| phosphogluconate dehydratase [H... 949 0.0 gi|134093980|ref|YP_001099055.1| dihydroxy-acid dehydratase [Her... 220 2e-58 >gi|134094317|ref|YP_001099392.1| phosphogluconate dehydratase [Herminiimonas arsenicoxydans] Length = 637 Score = 949 bits (2452), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/613 (73%), Positives = 522/613 (85%), Gaps = 7/613 (1%) Query: 1 MPLNATLASVTQRIAERSRPYRTAYLERLEAARRKGAQRGALACTNLAHGFAAFPANDKL 60 MPLN +++VT+RI ERSRPYR AYL +L + ++G QR +L+CTNLAHGFAAFPANDKL Sbjct: 1 MPLNPVVSAVTERIMERSRPYRAAYLNQLSESIQQGVQRSSLSCTNLAHGFAAFPANDKL 60 Query: 61 KLKEDKAPSLAIVSAYNDMLSAHQPFERFPQIIKEAAREAGAVAQFAGGTPAMCDGVTQG 120 LK+ K PS+AI+SAYNDMLSAHQP+ERFP+IIK+A R AG VAQFAGG PAMCDG+TQG Sbjct: 61 VLKQQKNPSVAIISAYNDMLSAHQPYERFPRIIKDAVRAAGGVAQFAGGVPAMCDGITQG 120 Query: 121 QSGMEMSLFSRDTIAMATAVALSHNMFDAALYLGVCDKIVPGLLIGALHFGHLPAVFVPA 180 Q GME+SLFSRDTIAM+TA+ALSHNMFDAA++LG+CDKIVPGLLIGALHFGHLPAVF+P Sbjct: 121 QPGMELSLFSRDTIAMSTAIALSHNMFDAAVFLGICDKIVPGLLIGALHFGHLPAVFIPG 180 Query: 181 GPMTSGMSNSDKVKIRQLYTSGKIGRAELLEAEAKSYHGAGTCTFYGTANSNQMLMEAMG 240 GPMT+GMSNS+K +IRQLY GKI R LLEAE+KSYH AGTCTFYGTANSNQMLME MG Sbjct: 181 GPMTTGMSNSEKSRIRQLYAQGKIDREALLEAESKSYHDAGTCTFYGTANSNQMLMEVMG 240 Query: 241 LHLPGAAFITPNTPLRDALTAAAAKQAAKITDLGSQYTPVGRMIDEKAIVNAIVALHATG 300 LHLPG+AF+TPNTPLRDALT AA++A +I+ G +TPVGR++DEK IVNAIVAL TG Sbjct: 241 LHLPGSAFVTPNTPLRDALTVRAAQRAVEISAQGQTFTPVGRLVDEKTIVNAIVALLTTG 300 Query: 301 GSTNHTLHLVAIAKAAGIVIDWDDFDKLSAVVPLITRIYPNGSADVNHFHAAGGTGFVLR 360 GSTNHT+HL+AIAKAAGIVIDW+DFD+LSAVVPL+TRIYPNG ADVNHFHAAGGTGFV+R Sbjct: 301 GSTNHTIHLIAIAKAAGIVIDWNDFDQLSAVVPLLTRIYPNGEADVNHFHAAGGTGFVIR 360 Query: 361 ELIDAGLMHDDVTTILGQGLRQHCKEPMLAAEGENGRPGIVTWHDAPAQSGDEGVLGTVA 420 EL+DAGL+HDDVTTILG+GLR HC EP L +G+ W AP S DE VL Sbjct: 361 ELLDAGLLHDDVTTILGEGLRAHCAEPFL--DGDQA-----VWKPAPHISADESVLRPAD 413 Query: 421 KPFAADGGLKLLQGNLGRAVIKISAVKPEHRVVEAPAVVFHSQEAFMAAFKAGELDRDFV 480 +PFA DGGL+LL GNLGRAVIKISAVKPE+ VEAPA+VF SQE FM A++ G+L++DFV Sbjct: 414 RPFAPDGGLRLLTGNLGRAVIKISAVKPEYHRVEAPAIVFKSQEEFMHAYQDGKLNQDFV 473 Query: 481 AVISFQGPRANGMPELHALTPALGILQDKGRHVALVTDGRMSGASGKVPAAIHVTPEVLG 540 AV+ FQGP+ANGMPELHALTPALG LQD G HVALVTDGRMSGASGKVPAAIHV+PEVL Sbjct: 474 AVVRFQGPKANGMPELHALTPALGSLQDAGFHVALVTDGRMSGASGKVPAAIHVSPEVLA 533 Query: 541 GGPLGRVRNGDIIRLDAETGTLQAKVEAAEWEARAQDSADLSGNQHGMGRELFSLFRNAV 600 GGPLG++R+GDII LDAE G LQA V+AAEW+ R S D S N GMGRELF++FR++V Sbjct: 534 GGPLGKIRDGDIILLDAEAGILQALVDAAEWQQRPHASVDRSANVVGMGRELFAMFRSSV 593 Query: 601 GTAEEGGATFGLP 613 AEEG ATF LP Sbjct: 594 SIAEEGAATFALP 606 >gi|134093980|ref|YP_001099055.1| dihydroxy-acid dehydratase [Herminiimonas arsenicoxydans] Length = 557 Score = 220 bits (561), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 165/518 (31%), Positives = 253/518 (48%), Gaps = 40/518 (7%) Query: 68 PSLAIVSAYNDMLSAHQPFERFPQIIKEAAREAGAVAQFAGGTPAMCDGVTQGQSGMEMS 127 P + I + ++ + + ++ I + ++AG Q G TP + DG++ G GM+ S Sbjct: 36 PMVGIANGHSTITPCNSGLQKLADIAIKTIKDAGGNPQVFG-TPTISDGMSMGTEGMKYS 94 Query: 128 LFSRDTIAMATAVALSHNMFDAALYLGVCDKIVPGLLIGALHFGHLPAVFVPAGPMTSGM 187 L SR+ IA A++ D L +G CDK +PG +I L ++P+++V G + G Sbjct: 95 LISREVIADCIETAVNGQWMDGVLVIGGCDKNMPGGMIAMLRT-NVPSIYVYGGTIKPGH 153 Query: 188 SNSDKVKIRQLY------TSGKIGRAELLEAEAKSYHGAGTCTFYGTANSNQMLMEAMGL 241 + I + T+G++ + + E + +G+C TAN+ EA+GL Sbjct: 154 WKGKDLTIVSAFEAVGEFTAGRMSQEDFDGIERNACPSSGSCGGMYTANTMSSSFEALGL 213 Query: 242 HLPGAAFITPNTPLRDALTAAAAKQAAKITDLGSQYTPVGRMIDEKAIVNAIVALHATGG 301 LP ++ T P + + +AA I + P ++ KAI NA+ + ATGG Sbjct: 214 ALPYSS--TMANPDDEKVGSAAESARVLIEAIKKDLKPR-DIVTRKAIENAVAVIMATGG 270 Query: 302 STNHTLHLVAIAKAAGIVIDW--DDFDKLSAVVPLITRIYPNGSADVNHFHAAGGTGFVL 359 STN LH +AIA AA IDW DDF+++ VP+I + P+G H AGG V+ Sbjct: 271 STNAVLHFLAIAHAA--EIDWTIDDFERMRKKVPVICDLKPSGKYVATDLHKAGGIPQVM 328 Query: 360 RELIDAGLMHDDVTTILGQGLRQHCKEPMLAAEGENGRPGIVTWHDAPAQSGDEGVLGTV 419 + L+DAGL+H D TI GQ + + H S D+ V+ T+ Sbjct: 329 KVLLDAGLLHGDCMTITGQTVAEALA------------------HIPSVPSADQDVIHTI 370 Query: 420 AKPFAADGGLKLLQGNLGR--AVIKISAVKPEHRVVEAPAVVFHSQEAFMAAFKAGELDR 477 K A G L +L+GNL V KI+ +K + V+ PA VF + + M A A ++ Sbjct: 371 DKALYAQGHLAILKGNLSPEGCVAKITGLK--NPVITGPARVFDDEYSAMDAIMANQIKA 428 Query: 478 DFVAVISFQGPRAN-GMPELHALTPALGILQDKGRHVALVTDGRMSGASGKVPAAIHVTP 536 V V+ + GP+ GMPE+ A T AL + Q G V L+TDGR SG + + HV+P Sbjct: 429 GDVLVMRYLGPKGGPGMPEMLAPTSAL-VGQGLGESVGLITDGRFSGGTWGMVVG-HVSP 486 Query: 537 EVLGGGPLGRVRNGDIIRLDAETGTLQAKVEAAEWEAR 574 E GG +G V GD + +DA +Q V E R Sbjct: 487 EAFVGGTIGLVEEGDSVTIDARQLLIQLNVSEEEIARR 524 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,258,323 Number of extensions: 55820 Number of successful extensions: 160 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 2 Length of query: 623 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 536 Effective length of database: 713,682 Effective search space: 382533552 Effective search space used: 382533552 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)