BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0904.p
         (553 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094316|ref|YP_001099391.1| glucose-6-phosphate isomerase [...   719   0.0  

>gi|134094316|ref|YP_001099391.1| glucose-6-phosphate isomerase
           [Herminiimonas arsenicoxydans]
          Length = 518

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/521 (66%), Positives = 400/521 (76%), Gaps = 3/521 (0%)

Query: 30  LFAQQPDRFERMHVRAAGLLLDYSKNRLNADTLALLMNLARERGVEALREAMFSGEKINF 89
           +FAQ P RF ++    AGL  DYSKN +N  T+ LL  LARE  VEA R+AMF+GE+IN 
Sbjct: 1   MFAQDPARFTKLSTEGAGLFFDYSKNIVNDQTMDLLHALARETRVEAQRDAMFAGEQINR 60

Query: 90  TEHRAVLHTALRAPLDACDTQVDGQAVAPEVHRVLQHMRSFSEQVRSGAWRGYTGREITD 149
           TEHRAVLHTALR P  +    +DG  + P++H VL  M +FSE+VRSG WRGY GREITD
Sbjct: 61  TEHRAVLHTALRRP-RSDKLALDGHDIIPDIHAVLDRMAAFSERVRSGTWRGYDGREITD 119

Query: 150 IVNIGIGGSFLGPQMVCTALRDYQHARLTAHFVSNVDGHDLDEVLSRIDPETTLFIVASK 209
           IVNIGIGGS+LGP+M C ALR + H RL  HFVSNVDGHDLD +L RIDP TTLFI+ASK
Sbjct: 120 IVNIGIGGSYLGPKMTCQALRSFGHPRLVMHFVSNVDGHDLDALLPRIDPATTLFIIASK 179

Query: 210 TFTTQETMLNAKSARAWFLQYGKQQDLARHFVAVSTNAAEVAAFGIDTANMFPFWDWVGG 269
           TF T ETM NA+SARAW L+      L +HFVAVST    V  FGI   NMFPFWDWVGG
Sbjct: 180 TFGTSETMTNARSARAWLLRSTNASQLPKHFVAVSTQLDLVTEFGIAAENMFPFWDWVGG 239

Query: 270 RYSVWSAIGLPVALLIGYEHFAQFLAGAHDMDRHFCEAPLETNMPVIQALVGIWNRNFLD 329
           RYSVWSAIGL + + IG + F +FLAGAH MD+HF   PLE N+PVI AL+GIWNRNF+ 
Sbjct: 240 RYSVWSAIGLALVMYIGMDRFREFLAGAHAMDQHFQHTPLEKNLPVILALIGIWNRNFIG 299

Query: 330 SASLTIAPYHQWLRFFPAYLQQLDMESNGKRITRDGTPVSVQTCPAIWGDVGTNGQHAYF 389
           S S++IAPYHQ LR FP YLQQL+MESNGKRI  DG+ V V TCP IWGDVGTNGQHAYF
Sbjct: 300 STSISIAPYHQDLRLFPGYLQQLEMESNGKRIKVDGSKVEVATCPVIWGDVGTNGQHAYF 359

Query: 390 QLLHQGTDITPIDFIAVLKPSHNIAEHQATLLANCFAQSEAFMRGKDAAEVRADLQAQGV 449
           QLLHQGTD+  +DFIA L+PSH +  HQ  LLANCFAQSEAFMRG++A EVRADLQ QG+
Sbjct: 360 QLLHQGTDVAVVDFIAALQPSHTLESHQLLLLANCFAQSEAFMRGRNADEVRADLQGQGL 419

Query: 450 PEAELAALVPHKTFTGNRPSNTLLLPELSPHALGAMIALYEHKTFVQGAIWGINSFDQWG 509
           P  E+  L+PH++F GNRPSNT+L+  L+P  LGA+IALYEHK FVQG IWGINSFDQWG
Sbjct: 420 PPEEVEKLIPHRSFPGNRPSNTILMDALTPGTLGALIALYEHKVFVQGVIWGINSFDQWG 479

Query: 510 VELGKVLAKTILAELKSDAAPDAARHDASTSALIALARQAL 550
           VELGK+LAK I  EL   A P  A+HD+ST+ LIA AR+ +
Sbjct: 480 VELGKLLAKNIAQELAEQARP--AQHDSSTNGLIARAREKM 518


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,065,010
Number of extensions: 44413
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 467
Effective length of database: 716,977
Effective search space: 334828259
Effective search space used: 334828259
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)