BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0902.p
         (286 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094314|ref|YP_001099389.1| RpiR family transcriptional reg...   454   e-129

>gi|134094314|ref|YP_001099389.1| RpiR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 283

 Score =  454 bits (1167), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/284 (78%), Positives = 251/284 (88%), Gaps = 1/284 (0%)

Query: 3   MLLDSIRTHINSLSKSEKKVAATILANPQLALAENLTALAKNAEVSEPTVIRFCRAIGYE 62
           MLLDSIRT  +SLSKSEKKVA  +L  P+LA+AEN+TALAK A+VSEPTV+RFCRAIG++
Sbjct: 1   MLLDSIRTQYDSLSKSEKKVALAVLEQPELAIAENITALAKKADVSEPTVVRFCRAIGFD 60

Query: 63  GWHDFKLKLAQSLALALPGADETLAQDDLAADLVNKICSRSINTLLDLRNHLNPDAIQLA 122
           GWH FK+KLAQ LALA PGADE+ A +DLA DLV+KICSRSINTLLDLRN L+ +AI+ A
Sbjct: 61  GWHAFKMKLAQGLALA-PGADESPAPEDLATDLVSKICSRSINTLLDLRNSLDANAIEQA 119

Query: 123 LDVLARANKIEFYGQGTSGIVANDAQHKFFRSGVPTVAYSDPHIHSIAASLLKAGDCVVA 182
           L VLARAN+IEFYGQGTSGI+A DAQHKFFRSG+PTVAY+DPHIHSIAASLLK GD VVA
Sbjct: 120 LQVLARANRIEFYGQGTSGIIAADAQHKFFRSGIPTVAYADPHIHSIAASLLKKGDAVVA 179

Query: 183 ISQRGGNAALLRSIQLARKGGADIIVLGPSGTPLAELATVLVPIDLSFNIDPYTPISARL 242
           ISQRG + ALLRS+QLAR  GAD+++L PSGTPLAELATVL+PIDL F+ DPYTPISARL
Sbjct: 180 ISQRGNSIALLRSVQLARSCGADVVILAPSGTPLAELATVLIPIDLHFHTDPYTPISARL 239

Query: 243 AHLVVIDILAVGLALRRGPEFRKKMQNAQKSLQKFDMQFDSFFR 286
           AHLVVIDILAVGLALR  PE RKKM NAQK+LQK +MQFDSF R
Sbjct: 240 AHLVVIDILAVGLALRLSPERRKKMLNAQKALQKIEMQFDSFLR 283


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 494,373
Number of extensions: 19601
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 205
Effective length of database: 733,452
Effective search space: 150357660
Effective search space used: 150357660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)