BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0901.p
         (311 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094313|ref|YP_001099388.1| transaldolase B [Herminiimonas ...   526   e-151

>gi|134094313|ref|YP_001099388.1| transaldolase B [Herminiimonas
           arsenicoxydans]
          Length = 311

 Score =  526 bits (1355), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 247/311 (79%), Positives = 284/311 (91%)

Query: 1   MSQLEQLKQYTTIVADTGDFQAMKAFAPQDATTNPSLILKAVQKAEYQPLLESVVKAHAG 60
           M+QLEQLKQYTTIVADTGDFQ++KAF PQDATTNPSLILKAVQK EY+P++E + + HAG
Sbjct: 1   MNQLEQLKQYTTIVADTGDFQSIKAFTPQDATTNPSLILKAVQKDEYRPIMEKIAREHAG 60

Query: 61  KSTDEIIDRLLIAFGLEILKLIPGRVSTETDARLSFDTEGTVAKGRELIRLYEEAGIARE 120
           KST +I+D LL+AFG EILK+IPGRVSTETDARLSFDT G++AKGRELIRLYE AGI+RE
Sbjct: 61  KSTAQIVDHLLVAFGTEILKIIPGRVSTETDARLSFDTAGSIAKGRELIRLYEAAGISRE 120

Query: 121 RVLIKIASTWEGIRAAEILEQDGIRCNLTLLFSLPQAIACAEARVQLISPFVGRIYDWYK 180
           RVLIKIASTWEGIRAAE+LE++GI CNLTLLFSLPQAIACA+A+VQLISPFVGRIYDWYK
Sbjct: 121 RVLIKIASTWEGIRAAEVLEKEGIHCNLTLLFSLPQAIACADAKVQLISPFVGRIYDWYK 180

Query: 181 KSTGQEYTGSDDPGVQSVKAVYNYYRKFGYATEVMGASFRNTSQIVELAGCDLLTISPDL 240
           KSTG +YTG+DDPGVQSVK +Y YYRKFGY TEVMGASFRNTSQI+ELAGCDLLTISP+L
Sbjct: 181 KSTGTDYTGADDPGVQSVKRIYTYYRKFGYQTEVMGASFRNTSQIIELAGCDLLTISPEL 240

Query: 241 LQKLADSDAPVERKLSKEAADAADIKRISLDEKAFRLALNADAMATEKLAEGIRQFAADA 300
           LQKLA+SDA + RKLS EAA  +D+++++LDEK FR  LN DAMATEKLAEGIR F  DA
Sbjct: 241 LQKLAESDATLTRKLSPEAAKNSDLEKLTLDEKTFRSMLNDDAMATEKLAEGIRAFCVDA 300

Query: 301 VKLEQIVEALR 311
           VKL++++EALR
Sbjct: 301 VKLDKLIEALR 311


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 536,626
Number of extensions: 20873
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 229
Effective length of database: 730,157
Effective search space: 167205953
Effective search space used: 167205953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)