BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0898.p (492 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 99 5e-22 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 86 6e-18 gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 82 7e-17 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 81 1e-16 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 80 2e-16 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 99.0 bits (245), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 11/244 (4%) Query: 3 ELLLEAHGVSKAFNEVAALTDGRLQLKRGSVHALCGGNGAGKSTFLGILMGLLRRDSGEV 62 +++L VSK F + ALTD +++ +G ++ L G NGAGK+TF ++ GL + DSG Sbjct: 8 QIILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSF 67 Query: 63 RLKGKSVDFHSPAEALDHHIAIITQELSPIAGMSVAENLFLGREPR-----IGGICVNTR 117 L GK+ +P IA Q + M+ EN+ +GR R G + + Sbjct: 68 ELAGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKA 127 Query: 118 AMQRQ------AQALLDRLQFQVDARALMQDLSLAQVQLVEIAKAFSHDCDVMIMDEPTS 171 A Q + A LLD + A + LS + +EIA+A + D ++ +DEP + Sbjct: 128 ARQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAA 187 Query: 172 AIGEKETEVLFRAIRSVAAQGTGIIYVSHRLSEIFQIADSYTVFRDGRYVQSGLMRDIDR 231 + E L + + A+G I+ + H + + + D TV G+ + G+ D+ + Sbjct: 188 GMNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADVQK 247 Query: 232 SELV 235 + V Sbjct: 248 NPAV 251 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 4/225 (1%) Query: 6 LEAHGVSKAFNEVAALTDGRLQLKRGSVHALCGGNGAGKSTFLGILMGLLRRDSGEVRLK 65 +E ++K F AL D L+ G + AL G +G GK+T L I+ GL + D G+V L Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 66 GKSVDFHSPAEALDHHIAIITQELSPIAGMSVAENLFLGREPRIGGICVNTRAMQRQAQA 125 G+ S + + + Q + M+V EN+ G R + ++ + Sbjct: 63 GEDA---SARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTK 119 Query: 126 LLDRLQFQVDARALMQDLSLAQVQLVEIAKAFSHDCDVMIMDEPTSAIGEKETEVLFRAI 185 LL+ +Q A LS Q Q + +A+A + + V+++DEP A+ K + L R + Sbjct: 120 LLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWL 179 Query: 186 RSVAAQ-GTGIIYVSHRLSEIFQIADSYTVFRDGRYVQSGLMRDI 229 R + + I+V+H E ++AD + G Q G +D+ Sbjct: 180 RRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDV 224 Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 18/220 (8%) Query: 264 SRHGEF---EDISLRVHAGEVVGIYGLMGSGRSEYLNCIYGLTRAHRGSVALAERPLPAG 320 + G F D+SL AGE+ + G G G++ L I GL + G V L G Sbjct: 10 KKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD------G 63 Query: 321 KPAASIAAGLSLVTEDRKESGLVLCASIQDNIALAAYRRLSRLPLIRR---SRVETLVGQ 377 + A++ V + L ++ +NIA R P R S ++ V + Sbjct: 64 EDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVR----PAATRPSESVIKEKVTK 119 Query: 378 MIQRLQIKVSSPHLPVSSMSGGNQQKVVLARCLSTQPRCLLCDEPTRGIDEGAKREVYQL 437 +++ +Q+ + P +SGG +Q++ LAR L+ +PR LL DEP +D ++E+ + Sbjct: 120 LLELVQLDWLADRYP-PQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRW 178 Query: 438 IDRFVHE-GGAALVVSSEAQEILDLCDRIAIFKSGRMVQV 476 + R E ++ V+ + +E L++ D+I + G + Q+ Sbjct: 179 LRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQI 218 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 81.6 bits (200), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 19/221 (8%) Query: 4 LLLEAHGVSKAFNEV-----AALTDGRLQLKRGSVHALCGGNGAGKSTFLGILMGLLRRD 58 LL+E GV+K+F + L + L G + AL G +G+GKST L I+ GL+ D Sbjct: 5 LLIELKGVAKSFKTADGTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAAD 64 Query: 59 SGEVRLKGKSVDFHSPAEALDHHIAIITQELSPIAGMSVAENLFLGREPRIGGICVNTRA 118 G + +G+ + +SP IA++ Q + ++V +N+ LG E + G+ + R Sbjct: 65 QGTAKYRGQEI--YSPVSG----IAMVFQSFALFPWLTVQQNVELGLEAQ--GMAPDER- 115 Query: 119 MQRQAQALLDRLQFQVDARALMQDLSLAQVQLVEIAKAFSHDCDVMIMDEPTSAI----G 174 +++A A+LD + AL ++LS Q V IA+ DV++MDE SA+ G Sbjct: 116 -EKRADAMLDLIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTG 174 Query: 175 EKETEVLFRAIRSVAAQGTGIIYVSHRLSEIFQIADSYTVF 215 E + + GI+ VSH + E +AD V Sbjct: 175 ETLRDDILEMWEEKRIPTKGILIVSHNIEEAVMMADRILVL 215 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 15/215 (6%) Query: 28 LKRGSVHALCGGNGAGKSTFLGILMGLLRRDSGEVRLKGKSVDFHSPAEALDHHIAIITQ 87 LK G+VH++ G NGAGKSTF+ + G R SG + G+ + +A Q Sbjct: 370 LKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIEFMGQIATAKQSHQLARMGLARTFQ 429 Query: 88 ELSPIAGMSVAENLFLGREPRIGGICVNTRAMQRQAQALLDRLQFQVDARALMQ------ 141 M+ EN+ +G + R T + R D ++ +AR L++ Sbjct: 430 NTELFGDMTCLENVLVGADSRYRSGLFAT--LLRLPSYFHDERRYAAEARCLLEYVGLDD 487 Query: 142 -------DLSLAQVQLVEIAKAFSHDCDVMIMDEPTSAIGEKETEVLFRAIRSVAAQGTG 194 +L + +EIA+A + ++++DEP + + E E L + IR++A+ Sbjct: 488 YAEEKARNLPFGHQRRLEIARALAMSPKLLLLDEPAAGLTHGEIEDLMKLIRNLASHQIT 547 Query: 195 IIYVSHRLSEIFQIADSYTVFRDGRYVQSGLMRDI 229 ++ V H + I ++D TV G+ + SG + ++ Sbjct: 548 VLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVAEV 582 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 8/203 (3%) Query: 271 DISLRVHAGEVVGIYGLMGSGRSEYLNCIYGLTRAHRGSVALAERPLPAGKPAASIAAGL 330 D++L+V +GEV+G+ G G+G++ I GL + G + L + GL Sbjct: 22 DVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELDGVDISRQPIHKRAQLGL 81 Query: 331 SLVTEDRKESGLVLCASIQDNI-ALAAYRRLSRLPLIRRSRVETLVGQMIQRLQIKVSSP 389 S + + E+ + S++DNI A+ +R++ L + ++E + ++ LQI+ Sbjct: 82 SYLPQ---EASVFRKLSVEDNIRAVLELQRVNGKAL-SKEQIEQRLDTLLADLQIEKLRE 137 Query: 390 HLPVSSMSGGNQQKVVLARCLSTQPRCLLCDEPTRGIDEGAKREVYQLIDRFVHEGG-AA 448 + +S +SGG +++V +AR L+T PR +L DEP G+D A E+ +++ RF+ E G Sbjct: 138 NQALS-LSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQRIV-RFLKERGIGV 195 Query: 449 LVVSSEAQEILDLCDRIAIFKSG 471 L+ +E L +CDR I G Sbjct: 196 LITDHNVRETLGICDRAYIINQG 218 Score = 78.2 bits (191), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 109/230 (47%), Gaps = 1/230 (0%) Query: 10 GVSKAFNEVAALTDGRLQLKRGSVHALCGGNGAGKSTFLGILMGLLRRDSGEVRLKGKSV 69 G+ K++ + D LQ++ G V L G NGAGK+T +++GL+ D+G + L G + Sbjct: 9 GLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELDGVDI 68 Query: 70 DFHSPAEALDHHIAIITQELSPIAGMSVAENLFLGRE-PRIGGICVNTRAMQRQAQALLD 128 + ++ + QE S +SV +N+ E R+ G ++ ++++ LL Sbjct: 69 SRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQRLDTLLA 128 Query: 129 RLQFQVDARALMQDLSLAQVQLVEIAKAFSHDCDVMIMDEPTSAIGEKETEVLFRAIRSV 188 LQ + LS + + VEIA+A + + +++DEP + + + R +R + Sbjct: 129 DLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQRIVRFL 188 Query: 189 AAQGTGIIYVSHRLSEIFQIADSYTVFRDGRYVQSGLMRDIDRSELVKAI 238 +G G++ H + E I D + G + SG DI E V+ + Sbjct: 189 KERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRV 238 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 838,518 Number of extensions: 33551 Number of successful extensions: 309 Number of sequences better than 1.0e-08: 38 Number of HSP's gapped: 254 Number of HSP's successfully gapped: 63 Length of query: 492 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 407 Effective length of database: 720,272 Effective search space: 293150704 Effective search space used: 293150704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)