BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0895.p (260 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 146 8e-37 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 137 4e-34 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 125 2e-30 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 107 8e-25 gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protei... 105 3e-24 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 146 bits (369), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 139/243 (57%), Gaps = 5/243 (2%) Query: 15 DFAGRVAIVTGAAAGIGLATSQLLARCGAQLVLVDRSQA-VLELAERLERDSQHHLGCVL 73 + AG+VA+VTGA+ GIG A +Q LA+ G +++ S++ ++E L + G VL Sbjct: 5 ELAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGK---GVVL 61 Query: 74 DVCDEAAIGRCIAQIEARYGRIDILVNNAGVALLQEAEVASSSDWDRTMAINLKAPFLLA 133 DV D A I +I+ +G + ILVNNAG+ Q A +WD +A NL + L+ Sbjct: 62 DVNDAARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRLS 121 Query: 134 QAVLPMMRRQQCGRIINLASQASVVALERHAAYCASKAGLVALSRVLALEWACHGITVNA 193 +AVL M + + GRIIN+ S Y A+KAG+ +SR LA E ITVN Sbjct: 122 RAVLRGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNC 181 Query: 194 ISPTVVETELGKQAWAGPVGVAMRARIPVGRFAQPEEVAHLVAYLASPQAAMITGENILI 253 ++P ++T++ K + A+ ++P+GR PE++A V++LASPQA+ ITG + + Sbjct: 182 VAPGFIDTDMTKTLSEQQIS-ALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLHV 240 Query: 254 DGG 256 +GG Sbjct: 241 NGG 243 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 137 bits (346), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 124/240 (51%), Gaps = 2/240 (0%) Query: 19 RVAIVTGAAAGIGLATSQLLARCGAQLVLV--DRSQAVLELAERLERDSQHHLGCVLDVC 76 R+A+VTG G+G A LA G Q+V + E ++ DV Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVS 62 Query: 77 DEAAIGRCIAQIEARYGRIDILVNNAGVALLQEAEVASSSDWDRTMAINLKAPFLLAQAV 136 D + +C+A I+ G ID+LVNNAG+ + +DWD M NL + F + + V Sbjct: 63 DYDSAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMTKPV 122 Query: 137 LPMMRRQQCGRIINLASQASVVALERHAAYCASKAGLVALSRVLALEWACHGITVNAISP 196 M + GRIIN++S + Y A+KAG+ ++ LALE A +TVN ISP Sbjct: 123 CDGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTISP 182 Query: 197 TVVETELGKQAWAGPVGVAMRARIPVGRFAQPEEVAHLVAYLASPQAAMITGENILIDGG 256 + T++ + + +IP+GR +PEEVA LVAYLAS +AA +TG NI I+GG Sbjct: 183 GYIGTKMVTAIPQDVLDTKIVPQIPMGRLGKPEEVAGLVAYLASDEAAFVTGANIAINGG 242 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 125 bits (315), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/270 (33%), Positives = 134/270 (49%), Gaps = 32/270 (11%) Query: 12 QPDDFAGRVAIVTGAAAGIGLATSQLLARCGAQLVL--VDRSQAVLELAERLERD----S 65 Q G+ A++TG+ +GIGL ++ LA+ GA +VL + + L L +D S Sbjct: 2 QNTTLQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLTQDYGVQS 61 Query: 66 QHHLGCVLDVCDEAAIGRCIAQIEARYGRIDILVNNAGVALLQEAEVASSSDWDRTMAIN 125 +H D+ I + A++G +DILVNNAG+ + + E WD +AIN Sbjct: 62 TYHPA---DMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDAIIAIN 118 Query: 126 LKAPFLLAQAVLPMMRRQQCGRIINLASQASVVALERHAAYCASKAGLVALSRVLALEWA 185 L + F + LP M+ + GRIIN+AS +V + +AY A+K G+V LS+V ALE A Sbjct: 119 LSSAFHTTRLALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTALENA 178 Query: 186 CHGITVNAISPTVVETELGKQAWAGPVGVAMRA-----------------RIPVGRFAQP 228 G+T NAI P V T L ++ V +RA + P G F P Sbjct: 179 QTGVTCNAICPGWVLTPLVQKQ------VDVRAANEDVSNDDAKKGLLAEKQPSGEFVTP 232 Query: 229 EEVAHLVAYLASPQAAMITGENILIDGGYT 258 E++ L +L S A + G +DGG+T Sbjct: 233 EQLGALAVFLCSEAANQVRGAAWSMDGGWT 262 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 107 bits (266), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 117/242 (48%), Gaps = 4/242 (1%) Query: 19 RVAIVTGAAAGIGLATSQLLARCGAQLVLVDRSQAVLELAERLERDSQHHLGCVLDVCDE 78 + A+V+G G+G A + L G + + A + A +++ + C DV D Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAVAVTYHHNA--DTAAEFRKNTSIPVFC-WDVSDY 59 Query: 79 AAIGRCIAQIEARYGRIDILVNNAGVALLQEAEVASSSDWDRTMAINLKAPFLLAQAVLP 138 A I Q+E G IDILVNNAG+ + W + NL + F +++ V+ Sbjct: 60 AQCQEGIRQVELDVGPIDILVNNAGITRDAVLHHMTPGQWIEVINTNLGSVFNMSRNVIE 119 Query: 139 MMRRQQCGRIINLASQASVVALERHAAYCASKAGLVALSRVLALEWACHGITVNAISPTV 198 MR + GRIIN++S A Y A+KAG+ ++ LALE A ITVNAI+P Sbjct: 120 GMRERNFGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKNITVNAIAPGY 179 Query: 199 VETELGKQAWAGPVGVAMRARIPVGRFAQPEEVAHLVAYLASPQAAMITGENILIDGGYT 258 +T++ A V + IPVG ++A LV +LA + ITG ++GG Sbjct: 180 CDTDM-VSAIPQEVLEKIVTGIPVGHLGTGSDIARLVVFLADNASGFITGATFDVNGGQF 238 Query: 259 VA 260 +A Sbjct: 239 MA 240 >gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Herminiimonas arsenicoxydans] Length = 239 Score = 105 bits (261), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 4/185 (2%) Query: 72 VLDVCDEAAIGRCIAQIEARYGRIDILVNNAGVALLQEAEVASSSDWDRTMAINLKAPFL 131 V D+ D A + + G + +LVNNAG+ +S+ W + ++L F Sbjct: 57 VFDITDAEAT-KVALETLLEAGPVQVLVNNAGIHSDAVFPGMTSAQWHSVIDVSLHGFFN 115 Query: 132 LAQAVLPMMRRQQCGRIINLASQASVVALERHAAYCASKAGLVALSRVLALEWACHGITV 191 + Q + M R + GRIIN++S A+V Y A+K L + ++ LALE A GITV Sbjct: 116 VTQPLTMPMIRTRWGRIINVSSIAAVTGNRGQVNYSAAKGALHSATKSLALELASRGITV 175 Query: 192 NAISPTVVETELGKQAWAGPVGVAMRARIPVGRFAQPEEVAHLVAYLASPQAAMITGENI 251 NA++P ++ T + ++A+ A++ +P+ R +PEEVA L+ +LASP AA I+G+ I Sbjct: 176 NAVAPGIIATGMIEEAFDDK---AIQNIVPMKRAGKPEEVADLIGFLASPNAAYISGQII 232 Query: 252 LIDGG 256 I+GG Sbjct: 233 SINGG 237 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 432,027 Number of extensions: 15356 Number of successful extensions: 78 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 63 Number of HSP's successfully gapped: 12 Length of query: 260 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 180 Effective length of database: 736,747 Effective search space: 132614460 Effective search space used: 132614460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)