BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0891.p (516 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 157 1e-39 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 155 4e-39 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 154 7e-39 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 152 5e-38 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 151 6e-38 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 157 bits (396), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 163/563 (28%), Positives = 270/563 (47%), Gaps = 106/563 (18%) Query: 6 FRTLTVGQRLFVLILLAMLGLVATAVVSMRQIENVFQAASYAQARTVPSVTTLDDALGAF 65 F+ +TVG +L L VA A+V+ I N +G Sbjct: 2 FKNMTVGTKLISSFLTLS---VAGAIVAGIGIYN----------------------MGKI 36 Query: 66 NAIQGRVYN-------YLTNPDAN--------DRGRLM-----QEMAVHRARMNKQLKTY 105 N G +YN Y+ DAN RG ++ +E +++ + K L + Sbjct: 37 NDKAGDIYNQELMGLSYI--KDANIDLLFIGRARGNVLLSTTEEERTLNKENIKKYLASA 94 Query: 106 TE-------VHVSDDADRAMLADDYAHIAA-FEEVVQRLLGLAGQE----QSAD------ 147 E + VSD A +A+ A YA ++ +E+ + R L LA +E +SA+ Sbjct: 95 KENLAKAQPLFVSDSA-KALFAK-YATVSQDYEKEMWRALALADKEPLQQRSAELTTSMA 152 Query: 148 ---------ERILVILELRAAIDSVQASFARHRSYDIALGDASALTAREIIANALDTVLM 198 + +L L + + + QA + YD ++R + L +L Sbjct: 153 QTRLHANTLDNVLTELSKQKEVRAAQAHVETEQLYD---------SSRAFMV--LLVILS 201 Query: 199 LAAGVMLVMMGVGWWLTRTLLRQMGGEPGDVVMVMRHISQGDLQQQITLKPGCRDSMMHA 258 +G++L G +TR L Q+GGEP V I+ GDL I L+ + SM+ A Sbjct: 202 AFSGILL-----GVLITRNLKGQLGGEPNYAAGVAARIAAGDLTVAIDLRSKDQTSMLFA 256 Query: 259 IQRMVERVCQVVTEVRSNAESLVSTAEEVSVTAQALSRASTEQATGVEQTSEALERIHGS 318 ++ M + + +V++VRS +++ + + +++ LS + EQA+ +E+T+ ++E I + Sbjct: 257 MREMRDSLASIVSQVRSGTDTITTASGQIAAGNLDLSSRTEEQASALEETASSMEEITST 316 Query: 319 ILSTSQNARLTDQIAAAAAVEARACAATVKQMV---AAIQQIAGKIV----VIDDIAYQT 371 + ++N++ +A A+ A A V Q+V +I + + KIV VID IA+QT Sbjct: 317 VKQNAENSQQASTLAVHASSTAIRGGAVVSQVVDTMGSITESSRKIVDIIGVIDGIAFQT 376 Query: 372 NLLALNATIEAAHAGEHGTGFAVVAAEVRRLAERSQAAAQEIDEVARHNV-------ALA 424 N+LALNA +EAA AGE G GFAVVA+EVR LA+RS +AA+EI ++ +V L Sbjct: 377 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIGDSVEKVDAGSKLV 436 Query: 425 STAEEQLNSMVPTITRTSSLVQEIVESSARQSAAVSQISQAATQLAQVIQQNSLSSEELA 484 A + +V I R + ++ +I + QSA + Q++QA Q+ +V QQN+ EE A Sbjct: 437 EQAGTTMKEIVGGIQRVADIMSDITAAGREQSAGIEQVNQAIAQMDEVTQQNAALVEEAA 496 Query: 485 VTSEELNRRAVLLQTTVGFFQCE 507 S+ L +A L V F+ + Sbjct: 497 AASQSLQDQATHLSEIVSVFKLD 519 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 155 bits (393), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 112/342 (32%), Positives = 191/342 (55%), Gaps = 21/342 (6%) Query: 183 LTAREIIANALDTVLMLAAGVMLVMMGVGWWLTRTLLRQMGGEPGDVVMVMRHISQGDLQ 242 LT R +IA +L AG + + +G+ L R++ Q+GGEP ++R I+ GDL Sbjct: 183 LTIRNVIAT------VLGAGAVAATL-LGFLLVRSVYAQLGGEPQYAAQIVRRIAGGDLS 235 Query: 243 QQITLKPGCRDSMMHAIQRMVERVCQVVTEVRSNAESLVSTAEEVSVTAQALSRASTEQA 302 I + G R+S++ A+Q M + + + V ++R ++++ + + +++ LS + +QA Sbjct: 236 ATIITRKGDRNSLLAAMQDMQQNLAKTVGDIRRASDTIATASGQIAAGNIDLSARTEQQA 295 Query: 303 TGVEQTSEALERIHGSILSTSQNARLTDQIAAAA---AVEARACAATVKQMVAAIQQIAG 359 + +E+T+ ++E + ++ + +A+ +Q+A +A AV+ A V + +I AG Sbjct: 296 SSLEETASSMEELTATVKQNAGHAQQANQLAVSASDIAVQGNTVVAQVVTTMDSISASAG 355 Query: 360 KIV----VIDDIAYQTNLLALNATIEAAHAGEHGTGFAVVAAEVRRLAERSQAAAQEIDE 415 +I VI+ IA+QTN+LALNA +EAA GE G GFAVVA EVR LA+RS AA+EI Sbjct: 356 RIGDIIGVINGIAFQTNILALNAAVEAARVGEQGRGFAVVATEVRSLAQRSAEAAKEIKS 415 Query: 416 VARHNV-------ALASTAEEQLNSMVPTITRTSSLVQEIVESSARQSAAVSQISQAATQ 468 + ++ L A +N +V +I + + ++ EI +S Q+A + Q++QA Q Sbjct: 416 LIDDSLEKVGAGATLVDQAGSTMNEIVASIGQVTDIMGEITTASREQTAGIEQVNQAIGQ 475 Query: 469 LAQVIQQNSLSSEELAVTSEELNRRAVLLQTTVGFFQCELGQ 510 + +V QQN+ EE A + L +A L V F+ E Q Sbjct: 476 MDRVTQQNAALVEEAAAAAGSLQEQACSLVQVVSVFKLEQAQ 517 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 154 bits (390), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 164/541 (30%), Positives = 276/541 (51%), Gaps = 70/541 (12%) Query: 6 FRTLTVGQRL---FVLILLAMLGLVATAVVSMRQIENVFQAASYAQARTVPSVTTLDDAL 62 F+ L +G RL F L+L+ M + V+ ++ + A+A + T+ + L Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDV---------AKATVLMEEATIKERL 53 Query: 63 GAFNAIQG------RVYNYLTNPDANDRGRLMQEMAVHRARMNKQLKTYTEVHVSDDADR 116 A I+G R + + D L QEM+ A ++KQ + VS + + Sbjct: 54 -AQQWIKGIETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKK 112 Query: 117 --AMLADDYAHIAAFEEVVQRLLGLAGQE-QSADERILVILELRAAID----SVQASF-A 168 A +A+ A A + V L G E Q+A + +++ A D SV+A A Sbjct: 113 LLATVAEKRATYTAIRDDVMNLREARGAELQNA-----IANKMKPAADAYIQSVEAVVNA 167 Query: 169 RHRSYDIALG--DASALTAREIIANALDTVLMLAAGVMLVMMGV--GWWLTRTLLRQMGG 224 + +++ A G D +AR +L++ G++ + +G+ W LTR++ + Sbjct: 168 QINNFEDAKGRVDTIYQSAR---------MLLIVLGLVALTLGIVLAWMLTRSITK---- 214 Query: 225 EPGD-VVMVMRHISQGDLQQQITLKPGCRDS---MMHAIQRMVERVCQVVTEVRSNAESL 280 P D V V R ++ GDL +IT+ +D ++ A++ M + + +T+VRS +++ Sbjct: 215 -PLDYAVSVARLVASGDLTGRITVD--SKDETGQLLQALKDMNDSLTASITQVRSGVDTI 271 Query: 281 VSTAEEVSVTAQALSRASTEQATGVEQTSEALERIHGSILSTSQNARLTDQIAAAAAVEA 340 + + +++ LS + EQA+ +E+T+ ++E + ++ + NAR +Q+A A+ A Sbjct: 272 ATASNQIASGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVA 331 Query: 341 RACAATVKQMVAAIQQI---AGKIV----VIDDIAYQTNLLALNATIEAAHAGEHGTGFA 393 V ++V + I A KIV VID IA+QTN+LALNA +EAA AGE G GFA Sbjct: 332 EKGGTVVSKVVDTMDGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFA 391 Query: 394 VVAAEVRRLAERSQAAAQEI-----DEVARHNVA--LASTAEEQLNSMVPTITRTSSLVQ 446 VVA+EVR LA+RS AAA+EI D V + + L + A + +V ++ R + ++ Sbjct: 392 VVASEVRSLAQRSAAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMA 451 Query: 447 EIVESSARQSAAVSQISQAATQLAQVIQQNSLSSEELAVTSEELNRRAVLLQTTVGFFQC 506 EI+ +S QSA + Q++QA Q+ QV QQN+ EE A +E LN +A L V F+ Sbjct: 452 EIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKL 511 Query: 507 E 507 + Sbjct: 512 D 512 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 152 bits (383), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 136/466 (29%), Positives = 243/466 (52%), Gaps = 43/466 (9%) Query: 77 TNPDANDRGRLMQEMAVHRARMNKQLKTYTEVHVSDDADRAMLADDYAHIAAFEEVVQRL 136 ++P++ + Q+ +++ +++ E ++ D ++ + A+ +A+ ++ + + Sbjct: 76 SDPESQE---FFQKAITAQSKQITEIQKSIEDRINSDKEKELFAEVAKKRSAYIDIRKSI 132 Query: 137 LGL--AGQEQSADERI--LVILELRAAIDSVQASFARHRSYDIALGDASALTAREIIANA 192 LG+ G A++ I ++ L A +DSV+ H ++ L D S I + Sbjct: 133 LGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLG-HYENEVKLADES------ITDDY 185 Query: 193 LDTVLMLAAG-VMLVMMG--VGWWLTRTLLRQMGGEPGDVVMVMRHISQGDLQQQITL-- 247 L + L G V+ +++G + W LT + R + + + V +++GDL + + Sbjct: 186 LSGRMALIIGAVIAILLGTLIAWRLTVGITRPLH----EALKVAESVAEGDLTARSDMAE 241 Query: 248 ---KPGCRDSMMHAIQRMVERVCQVVTEVRSNAESLVSTAEEVSVTAQALSRASTEQATG 304 +PG ++ A+ RM + + VT++R +++ + + E++ LS + +QA+ Sbjct: 242 TQDEPGL---LLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASS 298 Query: 305 VEQTSEALERIHGSILSTSQNARLTDQIAAAAAVEARACAATVKQMV---AAIQQIAGKI 361 +E+T+ ++E + ++ + N+R +Q+A AA+ A A V Q+V AI A KI Sbjct: 299 LEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKI 358 Query: 362 V----VIDDIAYQTNLLALNATIEAAHAGEHGTGFAVVAAEVRRLAERSQAAAQEI---- 413 V VID IA+QTN+LALNA +EAA AGE G GFAVVA EVR LA+RS AAA+EI Sbjct: 359 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLI 418 Query: 414 -DEVARHNVA--LASTAEEQLNSMVPTITRTSSLVQEIVESSARQSAAVSQISQAATQLA 470 D V + + L + A ++ +V + R + ++ EI +S QS + Q++QA +Q+ Sbjct: 419 GDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMD 478 Query: 471 QVIQQNSLSSEELAVTSEELNRRAVLLQTTVGFFQCELGQGACKQA 516 QV QQN+ EE A +E L +A L V F+ G + A Sbjct: 479 QVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRVGSGYATAQSA 524 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 151 bits (382), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 113/330 (34%), Positives = 184/330 (55%), Gaps = 20/330 (6%) Query: 202 GVMLVMMGVGWWLTRTLLRQMGGEPGDVVMVMRHISQGDLQQQITLKPGCRDSM---MHA 258 GV+L ++GV + L+R + G ++++ I+ GDL I +K R+ M M Sbjct: 196 GVLLGLIGVAIY-AFFLIRAITGPLKEMLLHFDTIASGDLTSNIEVK--SRNEMGTLMLG 252 Query: 259 IQRMVERVCQVVTEVRSNAESLVSTAEEVSVTAQALSRASTEQATGVEQTSEALERIHGS 318 +Q+M +R+ V +VR + ++ + E++ LS + +QA +E+T+ ++E + + Sbjct: 253 LQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELTST 312 Query: 319 ILSTSQNARLTDQIAAAA---AVEARACAATVKQMVAAIQQIAGKIV----VIDDIAYQT 371 + + NAR +Q+A +A AV+ A + V + AI A KIV VID IA+QT Sbjct: 313 VKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAFQT 372 Query: 372 NLLALNATIEAAHAGEHGTGFAVVAAEVRRLAERSQAAAQEIDEVARHNVA-------LA 424 N+LALNA +EAA AGE G GFAVVA+EVR LA+RS AAA+EI + +V L Sbjct: 373 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTRLV 432 Query: 425 STAEEQLNSMVPTITRTSSLVQEIVESSARQSAAVSQISQAATQLAQVIQQNSLSSEELA 484 + A + +V ++ R + ++ EI+ +S QSA + Q++ A Q+ +V QQN+ E+ A Sbjct: 433 AEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAA 492 Query: 485 VTSEELNRRAVLLQTTVGFFQCELGQGACK 514 + L +A L T V F+ + Q A + Sbjct: 493 AAASSLRDQATNLSTVVSVFKLQGHQSAPQ 522 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.127 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 693,376 Number of extensions: 21952 Number of successful extensions: 181 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 14 Length of query: 516 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 430 Effective length of database: 716,977 Effective search space: 308300110 Effective search space used: 308300110 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)