BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0889.p (264 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 147 8e-37 gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herm... 140 8e-35 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 133 8e-33 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 129 2e-31 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 129 2e-31 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 147 bits (370), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 133/241 (55%), Gaps = 2/241 (0%) Query: 20 RLALITGSSGGIGLALARGMAQAGAAIVLNGRDAGKLA-KVAAQLRAEGHTIHESSFDAT 78 RLAL+TG GG+G A+ +A G +V + A + A ++A G+ D + Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVS 62 Query: 79 SAEDVKAAVQKIESEIGAIDILVNNAGIQRRNPLEEFKESDWHDLINTNLNSVFYAAQAV 138 + + V I+ EIG ID+LVNNAGI R ++ +++DW ++ TNL+SVF + V Sbjct: 63 DYDSAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMTKPV 122 Query: 139 ARHMIPRGAGKIINICSVQSELGRPGIAPYTATKGAVKMFTKGMAIDWGKYGIQVNGLGP 198 M+ RG G+IINI SV ++ G G Y+A K + FTK +A++ + + VN + P Sbjct: 123 CDGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTISP 182 Query: 199 GYFKTEMNMALVNDAKFTDWLVGRTPSRRWGDVEDLVGAAVFLASDASRFVNGHILYVDG 258 GY T+M A+ D T +V + P R G E++ G +LASD + FV G + ++G Sbjct: 183 GYIGTKMVTAIPQDVLDTK-IVPQIPMGRLGKPEEVAGLVAYLASDEAAFVTGANIAING 241 Query: 259 G 259 G Sbjct: 242 G 242 >gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 228 Score = 140 bits (352), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 42 AGAAIVLNGRDAGKLAKVAAQLRAEGHTIHESSFDATSAEDVKAAVQKIESEIGAIDILV 101 AGA +VL R +L ++ A++ AEG H + D T +K+A+ E+E GAIDILV Sbjct: 2 AGAQVVLAARRVDRLKELRAEIEAEGGAAHVVTLDVTDYASIKSAIAHAETEAGAIDILV 61 Query: 102 NNAGIQRRNPLEEFKESDWHDLINTNLNSVFYAAQAVARHMIPRGAG------KIINICS 155 NNAG+ R L + ++ +++TN F+ AQ VA+ MI R G +IINI S Sbjct: 62 NNAGVAARGRLLDVTPEEYAYVMDTNQRGAFFVAQEVAKRMIARAKGDAKKQHRIINIAS 121 Query: 156 VQSELGRPGIAPYTATKGAVKMFTKGMAIDWGKYGIQVNGLGPGYFKTEMNMALVNDAKF 215 V P + Y+ +K A+ TK MA++WGK+GI VN + PGY TE+N + Sbjct: 122 VAGLRVMPELGAYSMSKAALVHMTKTMAVEWGKFGINVNAICPGYIGTELNQEYFKSEQ- 180 Query: 216 TDWLVGRTPSRRWGDVEDLVGAAVFLASDASRFVNGHILYVDGGVTA 262 L+ P +R G EDL G + LA++ S F+NG I+ D G++A Sbjct: 181 GKLLLDALPRKRIGKPEDLDGLLLLLAAEESHFINGAIMTADDGMSA 227 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 133 bits (335), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 92/265 (34%), Positives = 138/265 (52%), Gaps = 16/265 (6%) Query: 12 LQGFSLEGRLALITGSSGGIGLALARGMAQAGAAIVLNGR-DAGKLAKVAAQLRAE---G 67 +Q +L+G+ ALITGS+ GIGL +AR +AQ GA IVLNG DA ++A + A L + Sbjct: 1 MQNTTLQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLTQDYGVQ 60 Query: 68 HTIHESSFDATSAEDVKAAVQKIESEIGAIDILVNNAGIQRRNPLEEFKESDWHDLINTN 127 T H + D + +++ A +Q ++ G++DILVNNAGIQ +E+F W +I N Sbjct: 61 STYHPA--DMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDAIIAIN 118 Query: 128 LNSVFYAAQAVARHMIPRGAGKIINICSVQSELGRPGIAPYTATKGAVKMFTKGMAIDWG 187 L+S F+ + M + G+IINI S +G + Y A K + +K A++ Sbjct: 119 LSSAFHTTRLALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTALENA 178 Query: 188 KYGIQVNGLGPGYFKTEM----------NMALVNDAKFTDWLVGRTPSRRWGDVEDLVGA 237 + G+ N + PG+ T + N + ND L + PS + E L Sbjct: 179 QTGVTCNAICPGWVLTPLVQKQVDVRAANEDVSNDDAKKGLLAEKQPSGEFVTPEQLGAL 238 Query: 238 AVFLASDASRFVNGHILYVDGGVTA 262 AVFL S+A+ V G +DGG TA Sbjct: 239 AVFLCSEAANQVRGAAWSMDGGWTA 263 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 129 bits (323), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 124/244 (50%), Gaps = 5/244 (2%) Query: 17 LEGRLALITGSSGGIGLALARGMAQAGAAIVLNGRDAGKLAKVAAQLRAEGHTIHESSFD 76 L G++AL+TG+S GIG A+A+ +A+ G ++ A ++ L G + D Sbjct: 6 LAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGV---VLD 62 Query: 77 ATSAEDVKAAVQKIESEIGAIDILVNNAGIQRRNPLEEFKESDWHDLINTNLNSVFYAAQ 136 A A + +I+ E G + ILVNNAGI + K+ +W +I TNL SV ++ Sbjct: 63 VNDAARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRLSR 122 Query: 137 AVARHMIPRGAGKIINICSVQSELGRPGIAPYTATKGAVKMFTKGMAIDWGKYGIQVNGL 196 AV R M+ G+IINI SV G G Y A K V ++ +A + G I VN + Sbjct: 123 AVLRGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCV 182 Query: 197 GPGYFKTEMNMALVNDAKFTDWLVGRTPSRRWGDVEDLVGAAVFLASDASRFVNGHILYV 256 PG+ T+M L + L+ + P R G ED+ A FLAS + ++ G L+V Sbjct: 183 APGFIDTDMTKTL--SEQQISALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLHV 240 Query: 257 DGGV 260 +GG+ Sbjct: 241 NGGM 244 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 129 bits (323), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 126/240 (52%), Gaps = 6/240 (2%) Query: 20 RLALITGSSGGIGLALARGMAQAGAAIVLNGRDAGKLAKVAAQLRAEGHTIHESSFDATS 79 + AL++G + G+G A+A + AG A+ + A AA+ R + +I +D + Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAVAVTYHHN---ADTAAEFR-KNTSIPVFCWDVSD 58 Query: 80 AEDVKAAVQKIESEIGAIDILVNNAGIQRRNPLEEFKESDWHDLINTNLNSVFYAAQAVA 139 + ++++E ++G IDILVNNAGI R L W ++INTNL SVF ++ V Sbjct: 59 YAQCQEGIRQVELDVGPIDILVNNAGITRDAVLHHMTPGQWIEVINTNLGSVFNMSRNVI 118 Query: 140 RHMIPRGAGKIINICSVQSELGRPGIAPYTATKGAVKMFTKGMAIDWGKYGIQVNGLGPG 199 M R G+IINI SV E G+ G A Y A K + FTK +A++ + I VN + PG Sbjct: 119 EGMRERNFGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKNITVNAIAPG 178 Query: 200 YFKTEMNMALVNDAKFTDWLVGRTPSRRWGDVEDLVGAAVFLASDASRFVNGHILYVDGG 259 Y T+M A+ + + +V P G D+ VFLA +AS F+ G V+GG Sbjct: 179 YCDTDMVSAIPQEV--LEKIVTGIPVGHLGTGSDIARLVVFLADNASGFITGATFDVNGG 236 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 474,873 Number of extensions: 18234 Number of successful extensions: 95 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 75 Number of HSP's successfully gapped: 13 Length of query: 264 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 184 Effective length of database: 736,747 Effective search space: 135561448 Effective search space used: 135561448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)