BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0888.p
         (517 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093498|ref|YP_001098573.1| glycerol kinase [Herminiimonas ...   144   1e-35

>gi|134093498|ref|YP_001098573.1| glycerol kinase [Herminiimonas
           arsenicoxydans]
          Length = 498

 Score =  144 bits (362), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 197/479 (41%), Gaps = 38/479 (7%)

Query: 6   RYMLGVDIGTTSTKTVVFTLDGKVVAQYAEEYPVICTEPGMAEQDPDQIVAAALASIGGA 65
           +Y+L +D GTTS++ ++F   G++     +EYP I   PG  E D + I  + LA     
Sbjct: 3   KYILAIDQGTTSSRAILFNHAGQIHGMTQQEYPQIFPAPGWVEHDANAIWHSQLAVAQQV 62

Query: 66  VKAAKALPEDIALLSFSAAMHSVIALDADN-RLLCNSITWGDIRASVWAERIKHEHDGNA 124
           +K       DIA +  +    + +  D      + ++I W D R +   ++++ +     
Sbjct: 63  LKEQHLSAADIAAIGITNQRETTVLWDRQTGEPIAHAIVWQDRRTAALCDQLRADGKAPL 122

Query: 125 IYRRTGTPIHPMSPLCKLMWLRHEKPEVFQQAAR----FVGIKEYLLYQLFGQWVVDHSI 180
             ++TG  +       KL WL    P    +A R    F  I  +L+++L G  V D S 
Sbjct: 123 FQQKTGLVLDSYFSGTKLKWLLDHTPGARVRAERGELAFGTIDSWLIFKLSGNHVTDTSN 182

Query: 181 ASATGMFNLRELAWDQGALALLGVKPEQLPTPVPTIHRLPALSPEMAQRLRLAVDTPFII 240
           AS T +FN+    WD   LALL +    LP  VP+   +      +          P   
Sbjct: 183 ASRTLLFNIHTKQWDDELLALLDIPHSLLPAIVPSSGIVGQTYTSL-----FGQSIPIAG 237

Query: 241 GANDGVLSNLGVNAIEVGHVAVTIGTSGAMRTVIDEPLTDPHGRLFCYALTEKHWVVG-- 298
            A D   +  G      G    T GT   M           H  L    LT   W +G  
Sbjct: 238 IAGDQQAATFGQACHRPGMAKNTYGTGCFMLLNTGTQAIASHNNL----LTTIGWTLGND 293

Query: 299 ----------GPVNNGGNIFRWVRDELATAEAAAAREEGVDPYEALTRIAEQVRPGAEGL 348
                     G V   G I +W+RD L   + ++  E           +A  V P   G+
Sbjct: 294 VDARTDYMLEGSVFMAGAIIQWLRDGLGIIQHSSDVEA----------LATSV-PDNGGV 342

Query: 349 LFHPFMAGERAPLWNANLRGSFFGLALHHGKHHMIRAALEGVIFNLYSILPALEELVGP- 407
           +F P  +G  AP W+   RG+  G+     K H+ RAALE + +    +L A+++     
Sbjct: 343 VFIPAFSGLGAPYWDPYARGTIVGMTRGSNKAHIARAALESIAYQTVDVLEAMQKDAQIL 402

Query: 408 TKRMMATGGFARSALWRQMMADIFNREVVVPESVESSCLGAAVLGAWALGLVPSLSVIS 466
            + +   GG AR+ L  Q  AD+ N  V+ P   E++ LGAA L   A+    S   I+
Sbjct: 403 LQELRVDGGAARNDLLMQFQADMLNVPVIRPVVTETTALGAAYLAGLAVAFWESKEEIA 461


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 953,563
Number of extensions: 38964
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 431
Effective length of database: 716,977
Effective search space: 309017087
Effective search space used: 309017087
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)