BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0882.p
         (233 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094118|ref|YP_001099193.1| putative protein translocase su...   129   1e-31

>gi|134094118|ref|YP_001099193.1| putative protein translocase
           subunit [Herminiimonas arsenicoxydans]
          Length = 231

 Score =  129 bits (323), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 121/231 (52%), Gaps = 15/231 (6%)

Query: 6   LQQPLNDDELDRLGEFL--EEAGSPGMNIELLDGYFAALICGPEAVLPSEYLPQLLGEE- 62
           L QPL+D E D L +FL  +      M ++ L GY  AL+ GPE V  +E+LP + GE  
Sbjct: 3   LDQPLSDKEFDELDKFLLSDRTADDCMAMDSLHGYLTALVVGPEEVPLAEWLPHVWGENA 62

Query: 63  ---PPFENQEEASDILGLIMRHWNTIASTLARTLEEDMVYLPVLLEDE---HGVAHGNDW 116
              P F+N +E   I+GLI R  N IA TL    +E   Y P+  E E     V  G  W
Sbjct: 63  EAVPKFKNDKEYERIVGLIARFMNEIAITLEVAPKE---YEPLFCEHEWEGKPVLDGEAW 119

Query: 117 AQGFMHGVHCRLGAWEELLESEEFGEFMLPIFALVHEHDPDPNLRPPAITPDKRDAVLQA 176
           A GF  G+  R  AWE +  +      M PI+ L  E   +  L      P K   +   
Sbjct: 120 AWGFNLGMSLRAEAWEPI-HTSNIAPLMRPIYLLGAEEIEEEELVL-VDNPVKCHKLTIE 177

Query: 177 MIVSVTHIYRYFVPHRRSAVRMTSRRAGPKISRNDPCPCGSGRKYKYCCAA 227
           +  ++  I+++++PHR+SAV+ T +R  PK+ RND C CGSG+K+K CC A
Sbjct: 178 IEAAIPEIHKFWLPHRKSAVK-TVQRETPKVGRNDECSCGSGKKFKKCCGA 227


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 465,470
Number of extensions: 18039
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 154
Effective length of database: 740,042
Effective search space: 113966468
Effective search space used: 113966468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)