BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0881.p
         (440 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096341|ref|YP_001101416.1| hypothetical protein HEAR3187 [...   135   3e-33
gi|134093655|ref|YP_001098730.1| integral membrane protein [Herm...    72   7e-14

>gi|134096341|ref|YP_001101416.1| hypothetical protein HEAR3187
           [Herminiimonas arsenicoxydans]
          Length = 426

 Score =  135 bits (341), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 205/424 (48%), Gaps = 23/424 (5%)

Query: 23  AEFSLVKLRQTRIRAIAKTQGLRGRILAV-VHNQLDAYLSACQLGITLASLGLGWIGEPA 81
           +E ++V  ++ R++ +A+  G RG   A+ +      +LS  Q+GITL  +  G  GE +
Sbjct: 2   SEIAIVTSKRIRLQKLAE-NGSRGAKAALDLSESPSRFLSTIQVGITLIGIFNGAFGEAS 60

Query: 82  FARLLEPIFTLLGVSN---QELIHGISFVFAFLVISFLHIVAGELAPKSMAIRSPEKLGL 138
               L P   L+ V +   +E+  GI  V     I+F  ++ GEL PK +A++ PE +  
Sbjct: 61  LVERLTPEIALIPVLSMYAREIALGIVVVG----ITFGSLILGELVPKRIAMQYPEVVAS 116

Query: 139 WCAVPLYGFYWGMYPLIWVLNASSNWLLRVAGLGAAHGHDAHYSSDELKLILRAGGKSGK 198
             A P+      M P + +L  ++ ++LR+  LG  H  D   + +E+  ++R G  +G 
Sbjct: 117 VVAAPMLWLSRLMGPFVKILTGTTEFILRI--LGMHHKKDDAVTEEEIAGLIREGTDAGL 174

Query: 199 SGKFTRDEWNVLVQSLNFAELDVADIMRPASEIVALGDDKSLEENLDIIYRNRYSRYPYF 258
              F + E +++ ++L   +  VA +M P  ++  +  + ++E NL  I  + Y+R+P  
Sbjct: 175 ---FEKTEHDIVSRALRLDDQRVAALMTPRLDVHFIDLEDTIETNLAKIADSSYNRFPVC 231

Query: 259 DAERQQVLGLVHLKDVFLAQQDGRAISNL--KDYLRPVQFISPALPALDLLRRFRTGMPH 316
                 ++G+VH   +F     G+ I++L  +   RP  F+   + A+ LL   +     
Sbjct: 232 RGNISHIIGIVHAGSLFEQMIRGKTITSLDIEGATRPPLFVPETISAMQLLETLKKNRAE 291

Query: 317 FAIIGKKGQSPLGFITLDNMLSLLVGEIRDEFRHNTGEWSRQDDGTLLGKGSLPIVTLEN 376
            A++  +     G +TL ++L  LVG++     H+  +  R+DDG+ L  G +       
Sbjct: 292 LALVIDEYGEIEGIVTLSDVLGALVGDVSVIDEHHEVDGVRRDDGSWLIDGGVSFDRFRE 351

Query: 377 MLGIDIDYDD----SIDSVGGLVMEKLGDLPKEGQKIEFAAFDVVIKRMSGPKI---VLV 429
           +L  D+ + +    +  ++ G VM  LG +P+     E+  + + +  M   +I   ++ 
Sbjct: 352 LLETDVRFPEEASGTYHTLAGFVMTFLGHIPQMSDSFEWEGYRIEVVDMDRNRIDRLLIT 411

Query: 430 KVYP 433
           K+ P
Sbjct: 412 KIDP 415


>gi|134093655|ref|YP_001098730.1| integral membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 295

 Score = 71.6 bits (174), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 21/230 (9%)

Query: 217 AELDVADIMRPASEIVALGDDKSLEENLDIIYRNRYSRYPYFDAERQQVLGLVHLKDVFL 276
           +EL   DIM P S++  +   K + E L ++    +SR+P  + ER QV+G++  KD  L
Sbjct: 65  SELSARDIMVPRSQMDVIDITKPIAEWLPMVLETAHSRFPAIEGERDQVVGILMAKD--L 122

Query: 277 AQQDGRAISNLKDYLRPVQFISPALPALDLLRRFRTGMPHFAIIGKKGQSPLGFITLDNM 336
            +    A  +++  LRP  FI  +     LL  FR    H AI+  +     G IT++++
Sbjct: 123 LRYYAGASFDVRQMLRPAVFIPESKRLNVLLSDFRAKHNHMAIVVDEYGGVAGLITIEDV 182

Query: 337 LSLLVGEIRDEFRHNTGEWSRQDDGTLLGKGS-----------LPIVTLENMLGIDIDYD 385
           L  +VG+I DE+     ++  + D  L  K               +  +   LG  +   
Sbjct: 183 LEQIVGDIEDEY-----DFDEEQDNILAIKAGEYGPRWRIKALTELTQVNEELGTALTSQ 237

Query: 386 DSIDSVGGLVMEKLGDLPKEGQKIEFAAFDVVIKRMSGPKI--VLVKVYP 433
           D +D++GG +   L  +P +G+ I+       I R    +I  +LV+  P
Sbjct: 238 D-VDTLGGFITNHLARMPHKGEVIDIDNLRFEILRADARQIHVLLVEKLP 286


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.142    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 794,137
Number of extensions: 32476
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 440
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 355
Effective length of database: 720,272
Effective search space: 255696560
Effective search space used: 255696560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)