BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0876.p (380 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 286 1e-78 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 203 1e-53 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 191 6e-50 gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-b... 131 6e-32 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 131 7e-32 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 286 bits (732), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 145/299 (48%), Positives = 198/299 (66%), Gaps = 3/299 (1%) Query: 37 GENLIVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRLDGQLLNRVPPH 96 G+N +V ++ L I GEF TLLGPSG GKTT L M+AGF+ P G+I LDG L VPP Sbjct: 14 GDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLDGVDLTGVPPE 73 Query: 97 KRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQMGKFGDRYPTQ 156 +R + VFQNYALFPHMT+A N+A+PL + ++ + KV +AL+ V++ F RYP + Sbjct: 74 QRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDVRLTGFAARYPHE 133 Query: 157 LSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKRLGVTFVYVTHD 216 LSGGQ+QRV++AR LV P+L+L+DEPL ALD QLRE MQ+EL L K +G+TFVYVTHD Sbjct: 134 LSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEVGITFVYVTHD 193 Query: 217 QSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRFKGSVESVQGEHCT 276 Q+EAL +S R+AV ++G I+QL T +Y YP ++FVA+FIG N F G+V + G+ Sbjct: 194 QAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGTCNLFDGTVTQIAGDTML 253 Query: 277 VRLADGTVVTGLNVHRAHAGQAITACVRPERIRLAA---GGSAEPNAIRASIAGLIYFG 332 + + V L V G T +RPE+I+++A GG + N + L+Y G Sbjct: 254 LDVPGMGAVKALTVAGVQVGSKGTIALRPEKIQVSAEIVGGVPDENHFDGYVKELLYMG 312 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 203 bits (516), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 103/248 (41%), Positives = 160/248 (64%), Gaps = 9/248 (3%) Query: 26 VQFCGVKKTYDGENLIVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRL 85 ++ + K + G + + + L+ GE LLGPSG GKTT L ++AG E P G++ L Sbjct: 3 IEVKNINKKF-GNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 86 DGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATR------EAKVKQ 139 DG+ + +R +G VFQ+YALF HMT+ +N+A+ L VR ATR + KV + Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPA--ATRPSESVIKEKVTK 119 Query: 140 ALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLEL 199 L++VQ+ DRYP QLSGGQ+QR+ALAR L +P+++L+DEP GALD ++R+ ++ L Sbjct: 120 LLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWL 179 Query: 200 KALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGD 259 + LH L VT ++VTHDQ EAL ++D++ + ++G ++Q+ ++Y P + FV F+G+ Sbjct: 180 RRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFLGN 239 Query: 260 NNRFKGSV 267 N F+G V Sbjct: 240 VNLFRGRV 247 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 191 bits (484), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 111/274 (40%), Positives = 158/274 (57%), Gaps = 9/274 (3%) Query: 41 IVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRLDGQLLNRV----PPH 96 IV SL ++RG+ LLG SG GKTT L +AGFE T G I L G+ ++ P Sbjct: 33 IVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEISNAHFTATPE 92 Query: 97 KRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQMGKFGDRYPTQ 156 R IG+VFQ+YALFPH+++A NV + L RK+ R+A++ L +V + G ++P + Sbjct: 93 TRQIGVVFQDYALFPHLSVADNVGFGL--RKLAAPERQARIAALLTLVGLASQGKKFPHE 150 Query: 157 LSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKRLGVTFVYVTHD 216 LSGGQQQRVALAR L P L+L+DEP LD LRE + E++ + K +G T V VTHD Sbjct: 151 LSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTHD 210 Query: 217 QSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRFKGSVESVQGEHCT 276 Q EA ++D++ V GVI Q LY P N+FVA+FIG G ++ Q ++ Sbjct: 211 QHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVADFIGLGVFTPGIIDQ-QTQNVN 269 Query: 277 VRLADGTVVTGLNVHRAHA--GQAITACVRPERI 308 + L + G+ +A GQ + +R + + Sbjct: 270 IELGSLPLCHGMETCDPNAPDGQQVDVLLRADDV 303 >gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 362 Score = 131 bits (329), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 66/183 (36%), Positives = 106/183 (57%), Gaps = 8/183 (4%) Query: 57 LLGPSGSGKTTCLMMLAGFE------FPTGGEIRLDGQLLNRVPPHKRNIGMVFQNYALF 110 L G SGSGKTTCL ++AG E GE+ D +P H+R +G VFQ +LF Sbjct: 35 LFGASGSGKTTCLRVIAGLERAADVYLEVNGEVWQDDAHNIFLPTHQRPLGYVFQEASLF 94 Query: 111 PHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQMGKFGDRYPTQLSGGQQQRVALART 170 H+ + +N+ Y +R++ ++ R + A+ ++ +G R P +LSGG++QRVA+AR Sbjct: 95 AHLNVQRNLEY--GMRRIAKSARHVSLDHAVSLLDIGHLLQRKPDKLSGGERQRVAIARA 152 Query: 171 LVFDPQLVLMDEPLGALDKQLREHMQLELKALHKRLGVTFVYVTHDQSEALTMSDRVAVF 230 L P+++LMDEPL ALD + + + L+ LH L + +YV+H E ++D + + Sbjct: 153 LATSPRILLMDEPLAALDAKRKAEIMPYLERLHDELDIPVLYVSHSADEVARLADHLVLL 212 Query: 231 DQG 233 + G Sbjct: 213 ETG 215 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 131 bits (329), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 118/205 (57%), Gaps = 10/205 (4%) Query: 45 LDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRLDGQLLNRVPPHKRNIGMVF 104 ++L + +GEF+TL+G SG GK+T L ++AG TGG + + + P + +VF Sbjct: 31 INLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGGMLLCGNREIAGPSPER---AVVF 87 Query: 105 QNYALFPHMTIAQNVAYPLSVRKM-----DRATREAKVKQALDMVQMGKFGDRYPTQLSG 159 QN++L P +T +NV L+V ++ +A A+ + AL +V + + P ++SG Sbjct: 88 QNHSLLPWLTCYENVY--LAVERVFGKVEGKAKLRARTRAALSLVGLTHAEQKRPNEISG 145 Query: 160 GQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKRLGVTFVYVTHDQSE 219 G +QRV +AR L +P+++LMDEP GALD R H+Q EL + G T V VTHD E Sbjct: 146 GMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTHDVDE 205 Query: 220 ALTMSDRVAVFDQGVIQQLAPVTEL 244 A+ +SD++ + G + + E+ Sbjct: 206 AVLLSDKIVMLTNGPSATIGEILEV 230 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 704,852 Number of extensions: 28480 Number of successful extensions: 241 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 48 Length of query: 380 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 297 Effective length of database: 726,862 Effective search space: 215878014 Effective search space used: 215878014 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)