BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0873.p (277 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC trans... 157 5e-40 gi|134094076|ref|YP_001099151.1| sulfate ABC transporter membran... 77 7e-16 gi|134095673|ref|YP_001100748.1| thiosulfate ABC transporter mem... 70 8e-14 gi|134094077|ref|YP_001099152.1| sulfate ABC transporter membran... 60 1e-10 gi|134095674|ref|YP_001100749.1| thiosulfate permease W [Hermini... 57 7e-10 >gi|134096009|ref|YP_001101084.1| spermidine/putrescine ABC transporter inner membrane protein [Herminiimonas arsenicoxydans] Length = 258 Score = 157 bits (398), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 147/236 (62%), Gaps = 4/236 (1%) Query: 27 LLVLLFLVLPILVMIPLSFSDSSFLMYPIQGFSLRWYQNLFTSDDWIRAAQNSFIVAPAA 86 +LV FL +P+ +++ SF+DS L GF+L WY+ LF ++ +RAA NS I+A + Sbjct: 15 VLVYAFLYVPLAIVVMYSFNDSR-LNAEWVGFTLDWYRVLFADEEMLRAAGNSLIIALVS 73 Query: 87 TVIATVLGTLAAVGLNKADFRGKGILMAILISPMIVPVVVVGVGVYLFFARIGLSDSYLG 146 + ++TVLGT+A L++ R IL +++P+ +P ++VGV + +FF + ++ L Sbjct: 74 SAVSTVLGTMAGFALHRYKIRTLQIL---VLTPIAIPEILVGVSLLIFFVMLNITLGMLS 130 Query: 147 LILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGASPLRTFFRITLPVIAPGLISGAL 206 ++LAH A FV V + L G + +L A+ GA+P + F R+TLP+I PG+++GAL Sbjct: 131 VMLAHIAFSLGFVAIVVRSRLSGMDESLTEAARDCGATPWQAFRRVTLPLIMPGVVAGAL 190 Query: 207 FAFATSFDEVVLTLFVAGPEQATLPRQMFAGIKDNISPTIAALATILILFSTCLLL 262 AF S D+ V+T F AG TLP Q+++ IK ++P + A++T+L+ + L++ Sbjct: 191 MAFTLSIDDFVITFFTAGANTQTLPLQIYSMIKIAVTPEVNAVSTLLMALTLILIV 246 >gi|134094076|ref|YP_001099151.1| sulfate ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 289 Score = 77.4 bits (189), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 127/260 (48%), Gaps = 28/260 (10%) Query: 35 LPILVMIPLSFSDSSFLMYPIQGFSLRW--YQNLFTSDDWIRAAQNSFIVAPAATVIATV 92 L ++V+IPLS + FL + F++ W + TSD + + + +F + A V + Sbjct: 34 LSLIVLIPLS---AVFL----KTFTMSWDAFITAVTSDRVVASYKLTFGASLLAAVFNAI 86 Query: 93 LGTLAAVGLNKADFRGKGILMAILISPMIVPVVVVGV------------GVYLFFARIGL 140 G + A L + F GK ++ A++ P +P V G+ G YL I + Sbjct: 87 FGGIVAWVLVRYTFPGKKMIDAMVDLPFALPTAVAGIALTALYAPNGWIGRYLEMVGIKV 146 Query: 141 SDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGASPLRTFFRITLPVIAPG 200 + + LG+I+A +G PFVV T+ L+ L A++SLGAS +TF ++ P + P Sbjct: 147 AFTPLGVIVALTFIGLPFVVRTIQPVLEDAERELEEAAVSLGASHWQTFTKVIFPTVLPA 206 Query: 201 LISGALFAFATSFDEVVLTLFVAG--PEQATL-PRQMFAGIKDNISPTIAALATILILFS 257 L++G AFA + E +F+AG P + + P + ++ A+A +++L S Sbjct: 207 LLTGFALAFARATGEYGSVIFIAGNMPMVSEITPLFIVTKLEQYDYAGATAIAVVMLLAS 266 Query: 258 TCLLLALE----WLRGRNKA 273 +LL + W R R +A Sbjct: 267 FLMLLTINVLQAWTRKRGQA 286 >gi|134095673|ref|YP_001100748.1| thiosulfate ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 281 Score = 70.5 bits (171), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 116/232 (50%), Gaps = 20/232 (8%) Query: 33 LVLPILVMIPLSFSDSSFLMYPIQGFSLRWYQNLFTSDDWIRAAQNSFIVAPAATVIATV 92 L + +++++P+S + L+Y + G S Y T +++ + + + A +TVI T Sbjct: 26 LYISLVILLPIS----ALLVY-VSGMSFDQYWFAITDARVLQSYKVTLMGAFYSTVIVTF 80 Query: 93 LGTLAAVGLNKADFRGKGILMAILISPMIVPVVVVGVGVYLFFARIG------------L 140 +G L A + + DF G+ ++ +++ P +P V GV + + F G + Sbjct: 81 IGFLLAWIITRYDFPGRRLIDSLVDLPFALPTSVAGVTLSVLFMPTGWLGQWFDIFGIKI 140 Query: 141 SDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGASPLRTFFRITLPVIAPG 200 S ++ G+++A PF+V +V L+ + L A+L LGA+ + F+R+ LP + P Sbjct: 141 SYAFPGIVVAMIFTSLPFIVRSVQPVLEDMENELEEAALMLGANKWQIFWRVILPTLIPA 200 Query: 201 LISGALFAFATSFDEVVLTLFVAG--PEQATLPRQM-FAGIKDNISPTIAAL 249 LI+G+ AF S E + +AG P Q + M F +++ P AA+ Sbjct: 201 LITGSSQAFIRSLGEFGAVIMIAGNIPFQTEVTSLMLFVRLQEYNYPAAAAI 252 >gi|134094077|ref|YP_001099152.1| sulfate ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 287 Score = 60.5 bits (145), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 15/181 (8%) Query: 69 SDDWIRAAQNSFIVAPAATVIATVLGTLAAVGLNKADFRGKGILMAILISPMIVPVVVVG 128 +D + A + + I A A + + G A+ + K DFRGK L+ ++ P V V+ G Sbjct: 58 EEDALSAIKLTLITAAIAVPLNLIFGVAASWCIAKFDFRGKSFLLTLIDLPFSVSPVISG 117 Query: 129 VGVYLFFARIGLSDSYL------------GLILAHAALGAPFVVTTVLATLQGFNHNLVR 176 + L F G +L G++LA + PFV ++ +Q Sbjct: 118 LIYVLLFGAQGWFGGWLIEHNIKILFAVPGIVLATIFVTFPFVARELIPLMQSQGSEEEE 177 Query: 177 ASLSLGASPLRTFFRITLPVIAPGLISGALFAFATSFDEVVLTLFVAGP---EQATLPRQ 233 A+L LGAS +TF+ +TLP I GL+ G + A + E V+G + T+P Q Sbjct: 178 AALVLGASGWKTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGQTNTIPLQ 237 Query: 234 M 234 + Sbjct: 238 V 238 >gi|134095674|ref|YP_001100749.1| thiosulfate permease W [Herminiimonas arsenicoxydans] Length = 283 Score = 57.4 bits (137), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 71/269 (26%), Positives = 124/269 (46%), Gaps = 31/269 (11%) Query: 27 LLVLLFLVLPILVMIPLSFSDSSFLMYPIQGFSLRWYQNLFTSDDWIRAAQNSFIVAPAA 86 +L +L L++P++++ +FS L+ QNL S+D+++ A ++A Sbjct: 22 VLTILMLIVPLILIFTQAFSGGVELLR----------QNL--SEDYMQHALGLTLLAAVL 69 Query: 87 TV-IATVLGTLAAVGLNKADFRGKGILMAILISPMIVPVVVVG------------VGVYL 133 TV I V G L A + DF G+ +L+ ++ P VV G +G +L Sbjct: 70 TVPINLVFGILLAWCVTHYDFFGRRLLITLVEIPYATSPVVAGFCYLVVYGLEGVIGQWL 129 Query: 134 FFARIGLSDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGASPLRTFFRIT 193 + + L ++ G+I+ + AP++ ++ +Q A+LSLGA+ + F +T Sbjct: 130 YEKDVQLMFAWPGIIMVTVFVTAPYIARILMPLMQKQGTEEEIAALSLGATGWQIFRHVT 189 Query: 194 LPVIAPGLISGALFAFATSFDEVVLTLFVAGP---EQATLP---RQMFAGIKDNISPTIA 247 LP I L+ GA+ A + E V+G + TLP Q+ K + T A Sbjct: 190 LPNIKWALLYGAVITNARAVGEFGAVAVVSGTIMNQTLTLPLLVEQLNNDYKTAAAFTAA 249 Query: 248 ALATILILFSTCLLLALEWLRGRNKAAAR 276 AL + L + L +EW + R +A A+ Sbjct: 250 ALLACMALLTLILKTTMEWRQERREAEAK 278 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.330 0.142 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 400,205 Number of extensions: 12376 Number of successful extensions: 73 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 69 Number of HSP's successfully gapped: 6 Length of query: 277 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 197 Effective length of database: 736,747 Effective search space: 145139159 Effective search space used: 145139159 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 128 (53.9 bits)