BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0871.p (443 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096160|ref|YP_001101235.1| MFS family transporter [Hermini... 213 1e-56 gi|134094613|ref|YP_001099688.1| putative sugar transport protei... 180 1e-46 gi|134095871|ref|YP_001100946.1| putative transporter protein [H... 158 4e-40 >gi|134096160|ref|YP_001101235.1| MFS family transporter [Herminiimonas arsenicoxydans] Length = 429 Score = 213 bits (543), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 154/399 (38%), Positives = 225/399 (56%), Gaps = 17/399 (4%) Query: 8 HQPVRASLAAFVGTMIEWYDFYIYATASALVFGKLFFPTTNGFYGTLASFGTFAVGFLAR 67 ++P A+ +GT IE++DFYIYATA+ LVF LFFP+++ L S TFA+ F AR Sbjct: 12 NKPGTVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPSSSPTAAMLQSLATFAIAFFAR 71 Query: 68 PLGGAVFGTIGDRLGRKKSLVITLLMMGSVTVVIGLLPTYASIGIWAPIALVALRFIQGI 127 P+G AVFG GDR+GRK +LV LL MG TV IGLLPTYA+IG +AP+ L RF QG+ Sbjct: 72 PIGSAVFGHYGDRIGRKATLVAALLTMGISTVAIGLLPTYAAIGTFAPLLLALCRFGQGL 131 Query: 128 AVGGEWGGAVLMASEHSPDRSRRTFLASFAQLGSPAGLILATLMFKLVSG-MDNAVFLDW 186 +GGEWGGAVL+A+E++P + + F QLG+P G L+ +F L+ + N F + Sbjct: 132 GLGGEWGGAVLLATENAPP-GKIAWYGCFPQLGAPLGFFLSGGIFLLLGEVLTNEQFFSY 190 Query: 187 GWRLPFLMSALLLVVGFAIRLSVQESPDF---LDEQRRRASAPLAAKPASAPLAEVLRGA 243 GWR+PFL SA+L++VG +RL + E+P F LD+ R PLA V Sbjct: 191 GWRIPFLASAVLVLVGLYVRLKITETPAFQKVLDKGER----------VKIPLATVFSEH 240 Query: 244 PGLLVLAIGANVLGIAGFYFTNTFMLVYTTQYLQLQRGLVLNGLLVVSVMQFFIT-PLAA 302 +LVL + FY F L + T L R L L + +V+ F +T P++A Sbjct: 241 GRMLVLGTIIALATFVLFYLMTVFALSWGTTALGYSRQQFLI-LQLFAVIFFALTIPVSA 299 Query: 303 HLARKVGNHRFLVMMSALSIVSPYAMFSLVDLGSLASVTLGVAIAVLFIGAYYAVIAGFV 362 LA K G ++++S ++ + + S+ SV + +++ + +G Y + + Sbjct: 300 LLADKYGRRITMIVISVAMMLFGVLIAPMFVANSIISVAIFLSLGLALMGMTYGPLGTML 359 Query: 363 SDAFPTRIRYTGISMAYQVSGALFGGLTPLLGTVLAEKF 401 S+ FP IRYTG+S+ + + G L P T LA + Sbjct: 360 SELFPAEIRYTGVSLTFNLGGIFGASLAPYAATWLATNY 398 >gi|134094613|ref|YP_001099688.1| putative sugar transport protein [Herminiimonas arsenicoxydans] Length = 554 Score = 180 bits (456), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 185/329 (56%), Gaps = 19/329 (5%) Query: 9 QPVRASLAAFVGTMIEWYDFYIYATASALVFGKLFFPTTNGFYGTLASFGTFAVGFLARP 68 + + A+ +GT+ EWYDFY+Y + +A++ K FF T+ + + FA GFL RP Sbjct: 15 EERKVIFASSLGTVFEWYDFYLYGSLAAII-AKQFFAGTDPNTAFIFALLAFAAGFLVRP 73 Query: 69 LGGAVFGTIGDRLGRKKSLVITLLMMGSVTVVIGLLPTYASIGIWAPIALVALRFIQGIA 128 G VFG +GD +GRK + ++T+++MG T V+GLLP YASIG+ AP+ L+ LR +QG+A Sbjct: 74 FGAIVFGRLGDMIGRKYTFLVTIVIMGGSTFVVGLLPNYASIGLAAPVILIILRILQGLA 133 Query: 129 VGGEWGGAVLMASEHSPDRSRRTFLASFAQLGSPAGLILATL-MFKLVSGMDNAVFLDWG 187 +GGE+GGA +EH+P R F S+ Q + GL ++ L + + M F DWG Sbjct: 134 LGGEYGGAATYVAEHAPHGKRGAF-TSWIQTTATMGLFMSLLVILGTRTAMGEEAFADWG 192 Query: 188 WRLPFLMSALLLVVGFAIRLSVQESPDFLDEQRRRASAPLAAKPASAPLAEVLR--GAPG 245 WR+PFL+S LL + IRLS+ ESP F+ + K + APL E G Sbjct: 193 WRIPFLVSVFLLGISVWIRLSMAESPAFVKMKAE-------GKTSKAPLTEAFAKWGNLK 245 Query: 246 LLVLAIGANVLGIAGFYFTNTFM-LVYTTQYLQLQRGLVLNGLLVVSVM---QFFITPLA 301 +++LA+ G A ++T F L + TQ L++ G N L+ S++ FF+ + Sbjct: 246 IVILALVGLTAGQAVVWYTGQFYALFFLTQTLKVD-GATANILIAASLLLGTPFFV--IF 302 Query: 302 AHLARKVGNHRFLVMMSALSIVSPYAMFS 330 L+ K+G ++ ++ ++ + +FS Sbjct: 303 GTLSDKIGRKPIIMAGCLIAALTYFPIFS 331 >gi|134095871|ref|YP_001100946.1| putative transporter protein [Herminiimonas arsenicoxydans] Length = 449 Score = 158 bits (400), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 126/436 (28%), Positives = 215/436 (49%), Gaps = 34/436 (7%) Query: 9 QPVRASLAAFVGTMIEWYDFYIYATASALVFGKLFFPTTNGFYGTLASFGTFAVGFLARP 68 P ++ +G E++DF++YA AS LVF +FFP + GTL +F F+ F+ARP Sbjct: 35 DPGEIAIGVVIGRASEYFDFFVYAIASVLVFPTVFFPFASKLEGTLYAFTIFSFAFIARP 94 Query: 69 LGGAVFGTIGDRLGRKKSLVITLLMMGSVTVVIGLLPTYASIGIWAPIALVALRFIQGIA 128 +G +F I R R+ L + L ++G T I LP++A +G A + L LR QG+A Sbjct: 95 VGTVIFMEIQRRFSREAKLTLALFLLGGSTAGIAFLPSHAQLGTTAIVLLALLRCGQGVA 154 Query: 129 VGGEWGGAVLMASEHSPDRSRRTFLASFAQLGSPAGLILATLMFK-LVSGMDNAVFLDWG 187 +GG W G + + ++P +++R + A QLG+P G ILA +F ++ + F +WG Sbjct: 155 LGGSWDGLPSLLALNAP-QNKRGWYAMLGQLGAPIGFILAAGLFAYMLYTLAPQDFFEWG 213 Query: 188 WRLPFLMSALLLVVGFAIRLSVQESPDF---LDEQRRRASAPLAAKPASAPLAEVLRGAP 244 WR PF ++ + VV RL + +P++ LDE+ +PA+ + E+ R Sbjct: 214 WRYPFFVAFAINVVALFARLRLVSTPEYSRLLDERE--------LEPAN--VVEITRSQG 263 Query: 245 GLLVLAIGANVLGIAGFYFTNTFMLVY--------TTQYLQLQRGLVLNGLLVVSVMQFF 296 L++ A + A F+ F L + +Q+L++Q ++ GL + S++ Sbjct: 264 RNLIIGALAALASYALFHLVTVFPLSWIVLYSERSISQFLEIQ--MIGAGLAICSIIA-- 319 Query: 297 ITPLAAHLARKVGNHRFLVMMSAL-SIVSPYAMFSLVDLGSLASVTLGVAIAVLFIGAYY 355 + +A +VG L +++ L I S A ++ G + L + + + +G Y Sbjct: 320 ----SGLIADRVGRRTTLAVLAVLIGIFS--AFVPMLMNGGIFGENLFIIVGFILLGLSY 373 Query: 356 AVIAGFVSDAFPTRIRYTGISMAYQVSGALFGGLTPLLGTVLAEKFQGHWWPLALLFSGI 415 AG VS FP + RYTG ++ ++ + G PL+ L+ F + L LL + Sbjct: 374 GQAAGAVSANFPAKYRYTGAALTSDLAWLVGAGFAPLVALGLSANFGLGYVSLYLLSGAV 433 Query: 416 SLLSMLCVARLSRQRQ 431 L+ L + R R Sbjct: 434 GSLAALSLNRALEIRD 449 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.327 0.141 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 769,405 Number of extensions: 30158 Number of successful extensions: 164 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 3 Length of query: 443 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 358 Effective length of database: 720,272 Effective search space: 257857376 Effective search space used: 257857376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)