BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0870.p
         (339 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094107|ref|YP_001099182.1| putative histone deacetylase [H...   108   3e-25
gi|134095790|ref|YP_001100865.1| putative histone deacetylase/Ac...   101   7e-23

>gi|134094107|ref|YP_001099182.1| putative histone deacetylase
           [Herminiimonas arsenicoxydans]
          Length = 434

 Score =  108 bits (271), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 100/196 (51%), Gaps = 10/196 (5%)

Query: 132 CAIAGAQALLDGQPRAYALCRPPGHHARRDAAG--GFCYLNNAAIAAQMLSQRH--SRVL 187
           C  A  + +      A+AL RP GHH+ R   G  GFC LN  AI  + +  ++   ++ 
Sbjct: 84  CITAADKVMTKEVDNAFALVRPCGHHSFRVVHGSRGFCTLNMEAIMVEYIRHKYGVKKIA 143

Query: 188 VLDTDMHHGQGIQEIFYTRRDVMYVSIHGDPENFYPVVAGFEDERGSGEGHGYNLNLPMP 247
           ++DTD HHG G Q+IF+   + +++S+H D    YP  +GF DE G     G  +NLPMP
Sbjct: 144 IIDTDCHHGDGSQDIFWHDPNTLFISMHQDGRTLYP-GSGFADELGGPNAFGTTINLPMP 202

Query: 248 HGAPEAVFFERLTQACRAI-TLYQPEVLVLSLGFDIFEDDPQSVVGVSTAGFERLGREVA 306
               E  F   L +    I   ++P++++ S G D    DP + +  +  G+  L + +A
Sbjct: 203 PDTCEEGFLYVLDEIVMPILDEFKPDLIINSAGQDNHYSDPITNMKFTAHGYAVLNQRLA 262

Query: 307 ALGLPTLVVQEGGYHI 322
               P L V EGGY I
Sbjct: 263 ----PDLAVLEGGYSI 274


>gi|134095790|ref|YP_001100865.1| putative histone
           deacetylase/AcuC/AphA family protein [Herminiimonas
           arsenicoxydans]
          Length = 310

 Score =  101 bits (251), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 113/228 (49%), Gaps = 15/228 (6%)

Query: 111 LADGSCPVGPQTWHSAYWSAQCAIAGAQALLDGQPR-AYALCRPPGHHARRDAAGGFCYL 169
           L  G   + P +  +       A AG  A++  + R  +   RP GHHA  + A GFC  
Sbjct: 79  LDGGDTVMSPGSLEAVMRCVGAACAGVDAVMGKEVRNVFCATRPCGHHAEPNKAMGFCIY 138

Query: 170 NNAAIAAQMLSQRHS--RVLVLDTDMHHGQGIQEIFYTRRDVMYVSIHGDPENFYPVVAG 227
           N AAIAA      H   RV V+D D+HHG G Q  FY R ++ Y S H    +FYP   G
Sbjct: 139 NQAAIAAAYAYDVHKLERVAVVDFDVHHGNGTQAAFYDRPELFYASSH--QSHFYPGT-G 195

Query: 228 FEDERGSGEGHGYNLNLPMPHGAPEAVFFERL-TQACRAITLYQPEVLVLSLGFDIFEDD 286
            E E  +G  H   +N+P+P G   A+F E++  +   AI  + PE+L++S GFD    D
Sbjct: 196 LEAE--TGISHNI-VNVPLPRGCDSAMFREQIAAKMLPAIRAFNPEILIISAGFDAHHLD 252

Query: 287 PQSVVGVSTAGFERLGREVAALGLP-----TLVVQEGGYHIAGLQANA 329
           P + + +    F+ + RE+  +         + + EGGY + GL ++ 
Sbjct: 253 PLAGLNLQDDDFDWVTRELMKIADDCCEGRVVSILEGGYSLEGLASST 300


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 737,059
Number of extensions: 32913
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 257
Effective length of database: 730,157
Effective search space: 187650349
Effective search space used: 187650349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)